Non-Coding RNA Search

Ss1.1-rhyp08c_k20.5

Sequence:


               
               CTGGCCAACCCACGCAAGCCCGTGGAGCACTGGCATCAGCTGGTGGAGGAAAAGACTTTG
ACAAGTTTCACTAAAGGCAGCAAAGGATTGTCAGAGAAAGAGAACTCAGAGTGAGGGGTC
TGGCCCAGGCTCGGGATCGGACCAGGCCCCTTCAGGATTCCACCCCTTCCTGCCTGGACT
GTGAATTCATCTCCTCGAAGCCATAACGCCCGAGCCGAGTGGTGCGGGGCAGCCCTGGGC
CCGCCCCTCCTTCTGCCCCCAGATGCGTGGGGGTGGGAGGCTGGCGGGCCCAGCTCCCTG
TTTCAGGGTGGGGGGCATTCAGTCTCCACTGTGTCTGTCTTCCCTTCCCCGGGGCTCCCC
ATCCAGGCGAGGGGCCATGCATGTCTGGGGGACCCCTGCCCCCCCCAACCTCCGTCTGTC
TCTCTGTCTGTGTCTTTGCTGTTTGTACAAGACTTGGTGTCCTAATCCCTCGTTCTCGCT
GTGAATGTCAATGGACCACTCCTCCGTGTTCCCCTGGATACACACCCCTGTGTCGACCCT
TTCTGTTCACCACACTCCACGTCTAGCCCCTCCTCCCCACTGCTGCTGCTATCAAATACC
AGAATAAACACTCACCGTGGGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCCAACCCACGCAAGCCCGTGGAGCACTGGCATCAGCTGGTGGAGGAAAAGACTTTG
ACAAGTTTCACTAAAGGCAGCAAAGGATTGTCAGAGAAAGAGAACTCAGAGTGAGGGGTC
TGGCCCAGGCTCGGGATCGGACCAGGCCCCTTCAGGATTCCACCCCTTCCTGCCTGGACT
GTGAATTCATCTCCTCGAAGCCATAACGCCCGAGCCGAGTGGTGCGGGGCAGCCCTGGGC
CCGCCCCTCCTTCTGCCCCCAGATGCGTGGGGGTGGGAGGCTGGCGGGCCCAGCTCCCTG
TTTCAGGGTGGGGGGCATTCAGTCTCCACTGTGTCTGTCTTCCCTTCCCCGGGGCTCCCC
ATCCAGGCGAGGGGCCATGCATGTCTGGGGGACCCCTGCCCCCCCCAACCTCCGTCTGTC
TCTCTGTCTGTGTCTTTGCTGTTTGTACAAGACTTGGTGTCCTAATCCCTCGTTCTCGCT
GTGAATGTCAATGGACCACTCCTCCGTGTTCCCCTGGATACACACCCCTGTGTCGACCCT
TTCTGTTCACCACACTCCACGTCTAGCCCCTCCTCCCCACTGCTGCTGCTATCAAATACC
AGAATAAACACTCACCGTGGGTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               196-312, + strand, RNAz p=0.531549

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-312, + strand, RNAz p=0.531549

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               220-308, + strand, RNAmicro p=0.999982
               

               
               235-296, - strand, RNAmicro p=0.932565

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               220-308, + strand, RNAmicro p=0.999982
               

               
               235-296, - strand, RNAmicro p=0.932565

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_032298, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032298, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               117-624, gnl|bosTau2|chr18 (49390372-49389863)
               

               
               117-624, gnl|Hg17|chr19 (55817551-55817054)
               

               
               117-624, gnl|Mm7|chr7 (40573371-40573864)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-624, gnl|bosTau2|chr18 (49390372-49389863)
               

               
               117-624, gnl|Hg17|chr19 (55817551-55817054)
               

               
               117-624, gnl|Mm7|chr7 (40573371-40573864)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ece (0.229305)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)

	220-308, + strand, RNAmicro p=0.999982
	235-296, - strand, RNAmicro p=0.932565

	117-624, gnl\|bosTau2\|chr18 (49390372-49389863)
	117-624, gnl\|Hg17\|chr19 (55817551-55817054)
	117-624, gnl\|Mm7\|chr7 (40573371-40573864)