Non-Coding RNA Search

Ss1.1-rhyp08c_k5.5

Sequence:


               
               CTCATTTGAAATGAAGTTACTGCTATTCCCTCTTTTTTAAAAAAAATATGTCGGCACTTT
TTAACATCTAGGATCTTTATTATCCAATGCCTTTATTTCAACTATGTTTTGATGTTTCTC
TCTCTTAATAGCAGGTCATGCAAATTTTTTAAATTTGTGTCCCTTTAGAGTGTTTCAGAG
GTAACCACGAACTACGATTTTTAAGAAGGCAAGTGAAAGGAGAACTTTGATTTCTGTGAA
GAAGTCAAGGAAGACTATACAAGATAAAAACCTCTATTGGGATAATGCAGTCTTTTTAAT
CATGATATCAGCAAAACCAAGCTGGCAAATTTATGGTAAGGTAGCTGAAGCTAGAGAAAA
AAAATTTCCATGAAAAAATAATGAAAAACCTTAAACACTGTACCAAATTCCATTGATATG
TTAAAAAAAATTAAAACTGAAGTTAAACATGTTATAATTTTAACCTGCCGATTCCACTGA
AAATACTAAACACTTTTAACGCTCTTTAGATATTTTTTTGTGTAGCTACACTTTGTCTCA
AAAAACATAAATATTTCTTAAATATAGGTATTTTTGCTCAATTCACGTTCACTAATCTGC
TTACTCTCTTGTATGCCAACACAGTTAATGCTACGAGTAGCTTTGTACATTTTAGAGCTT
TATTATGAATCTTTCTAATAAACATTAAATTAATATTAAATTGGAATTATGTACATTGTG
AAAAATAATTCATAACCAAGCAATATCCATATTATAGGATAATTCATTATATATATGAGT
ATTACTTTGAGACTGAACAAATAATTATGCTGCTGAAAATATTACTCTCAAGTCCTTCTC
TCTCTTCAATTATTGTAGTCAATTCATAAAATTCTGCAGACAGTTGTGCCCGTGATGTGT
TATCAAAGTACTCCATAATCCAAATGTGTCTAAAAGTATTCCCAAGGCTTCTTTCATTCT
AAAATGCTAAAGGAAAGAGCTTGAAAGAAGAGAGAGAAAGTAAATTTGTCTTCTAAGGGT
CTAATTTAGATAAACGTTGTCACTGAGAATGAATAATTTTAAAATGAGAATGTTGCACTC
TGTGATCTGAGGGAGAGATTATTAAAGACTTACTGTTAGTCCAATATTGGAGGACTTCAG
ATTTTAAAGGCGTTAAGTTTGTCTCAATGGCCCAAGACTGCAGAATCTCACACTACATTG
GCAAAGAAGTATTATTTAAAATCTGTACCTAAAGTGGCTTTTTACAGGTTAATTCCTCTG
AGTTTTCTGAAGGTGAAATTGGCAAAATAGTCCTTGCTTCAAAATGAAATGTATTGGTTG
ACCTCAAAAACAAAATGTTTGGCAAAATTCATGAGTGTCCTCAAGCCTTTAATAGAAAGT
AGAGGTCTTGGGGGATGGACTCACAATACACTGACTAGAACAGAGTGTCCTCTTATGCCG
ACCACTGCCTAGGCCTCTGAAACCTTTTTTAATGCCTTGAATTTCAACTTGTCACAATGT
CTTATGTTTTGAATGACATTATGAATCAAGAGAGATGAGGAAAAAACAATAAAAGTTGGT
TTTCATGCCTCATTTGAAATAAAGATTTCCTTTACCATCCTAAGTAATAAAAGATGATAT
GTCTTGAAACAGCTGTGGACAATCAAAATGTGTTCATTTATAAACAAGACTTCTTTGTAT
AGTCTAACTCTGATCTTTGCCTATGAATTACAAAGACAAGAATTGCAGGAAGAGTCAACT
TGACTTCCTTTAATGGCTTCTGTGAATGTACTGGAAAGTGGAAGAATAATTTGGAAAAGT
TTTCATGCTGTTTTCGCATTTGCCTAGCATTGAATCTAATTCAAGATGCATCTCTTCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATTTGAAATGAAGTTACTGCTATTCCCTCTTTTTTAAAAAAAATATGTCGGCACTTT
TTAACATCTAGGATCTTTATTATCCAATGCCTTTATTTCAACTATGTTTTGATGTTTCTC
TCTCTTAATAGCAGGTCATGCAAATTTTTTAAATTTGTGTCCCTTTAGAGTGTTTCAGAG
GTAACCACGAACTACGATTTTTAAGAAGGCAAGTGAAAGGAGAACTTTGATTTCTGTGAA
GAAGTCAAGGAAGACTATACAAGATAAAAACCTCTATTGGGATAATGCAGTCTTTTTAAT
CATGATATCAGCAAAACCAAGCTGGCAAATTTATGGTAAGGTAGCTGAAGCTAGAGAAAA
AAAATTTCCATGAAAAAATAATGAAAAACCTTAAACACTGTACCAAATTCCATTGATATG
TTAAAAAAAATTAAAACTGAAGTTAAACATGTTATAATTTTAACCTGCCGATTCCACTGA
AAATACTAAACACTTTTAACGCTCTTTAGATATTTTTTTGTGTAGCTACACTTTGTCTCA
AAAAACATAAATATTTCTTAAATATAGGTATTTTTGCTCAATTCACGTTCACTAATCTGC
TTACTCTCTTGTATGCCAACACAGTTAATGCTACGAGTAGCTTTGTACATTTTAGAGCTT
TATTATGAATCTTTCTAATAAACATTAAATTAATATTAAATTGGAATTATGTACATTGTG
AAAAATAATTCATAACCAAGCAATATCCATATTATAGGATAATTCATTATATATATGAGT
ATTACTTTGAGACTGAACAAATAATTATGCTGCTGAAAATATTACTCTCAAGTCCTTCTC
TCTCTTCAATTATTGTAGTCAATTCATAAAATTCTGCAGACAGTTGTGCCCGTGATGTGT
TATCAAAGTACTCCATAATCCAAATGTGTCTAAAAGTATTCCCAAGGCTTCTTTCATTCT
AAAATGCTAAAGGAAAGAGCTTGAAAGAAGAGAGAGAAAGTAAATTTGTCTTCTAAGGGT
CTAATTTAGATAAACGTTGTCACTGAGAATGAATAATTTTAAAATGAGAATGTTGCACTC
TGTGATCTGAGGGAGAGATTATTAAAGACTTACTGTTAGTCCAATATTGGAGGACTTCAG
ATTTTAAAGGCGTTAAGTTTGTCTCAATGGCCCAAGACTGCAGAATCTCACACTACATTG
GCAAAGAAGTATTATTTAAAATCTGTACCTAAAGTGGCTTTTTACAGGTTAATTCCTCTG
AGTTTTCTGAAGGTGAAATTGGCAAAATAGTCCTTGCTTCAAAATGAAATGTATTGGTTG
ACCTCAAAAACAAAATGTTTGGCAAAATTCATGAGTGTCCTCAAGCCTTTAATAGAAAGT
AGAGGTCTTGGGGGATGGACTCACAATACACTGACTAGAACAGAGTGTCCTCTTATGCCG
ACCACTGCCTAGGCCTCTGAAACCTTTTTTAATGCCTTGAATTTCAACTTGTCACAATGT
CTTATGTTTTGAATGACATTATGAATCAAGAGAGATGAGGAAAAAACAATAAAAGTTGGT
TTTCATGCCTCATTTGAAATAAAGATTTCCTTTACCATCCTAAGTAATAAAAGATGATAT
GTCTTGAAACAGCTGTGGACAATCAAAATGTGTTCATTTATAAACAAGACTTCTTTGTAT
AGTCTAACTCTGATCTTTGCCTATGAATTACAAAGACAAGAATTGCAGGAAGAGTCAACT
TGACTTCCTTTAATGGCTTCTGTGAATGTACTGGAAAGTGGAAGAATAATTTGGAAAAGT
TTTCATGCTGTTTTCGCATTTGCCTAGCATTGAATCTAATTCAAGATGCATCTCTTCAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1336, gnl|bosTau2|chr6 (22720462-22721819)
               

               
               1-1336, gnl|Hg17|chr4 (62770616-62772031)
               

               
               1-1336, gnl|Mm7|chr5 (81733664-81734903)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1336, gnl|bosTau2|chr6 (22720462-22721819)
               

               
               1-1336, gnl|Hg17|chr4 (62770616-62772031)
               

               
               1-1336, gnl|Mm7|chr5 (81733664-81734903)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               fco (0.157208)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               hyp (0.142837)

	1-1336, gnl\|bosTau2\|chr6 (22720462-22721819)
	1-1336, gnl\|Hg17\|chr4 (62770616-62772031)
	1-1336, gnl\|Mm7\|chr5 (81733664-81734903)