Non-Coding RNA Search

Ss1.1-rhyp09c_i9.5

Sequence:


               
               ACGTGGGGCAGCGAGTGACCATGACGAAATTAGCGCAGTGGCTGTGGGGACTGGCGCTTC
TAGGCTCCACCTGGGCGGCCCTGACCATGGGAGCCCTTGGCCTGGAGCTGCCCTCGTCTT
GCCGGGAGGTGCTGTGGCCACTGCCCGCCTACTTGCTGGTGTCTGCTGGCTGCTATGCCC
TGGGCACTGTGGGCTATCGCGTGGCCACTTTTCACGATTGCGAGGACGCCGCCCGTGAGC
TGCAGAGCCAGATCCAGGAGGCCCGAGCCGACTTGGCCCGCAGGGGGATGCGCTTCTGAC
ACCCTAACCGAATTCCCGCCTGGACAGCCTGCTCTCTCATTCTCCCATTAAAGAGCCAGT
TTATTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGTGGGGCAGCGAGTGACCATGACGAAATTAGCGCAGTGGCTGTGGGGACTGGCGCTTC
TAGGCTCCACCTGGGCGGCCCTGACCATGGGAGCCCTTGGCCTGGAGCTGCCCTCGTCTT
GCCGGGAGGTGCTGTGGCCACTGCCCGCCTACTTGCTGGTGTCTGCTGGCTGCTATGCCC
TGGGCACTGTGGGCTATCGCGTGGCCACTTTTCACGATTGCGAGGACGCCGCCCGTGAGC
TGCAGAGCCAGATCCAGGAGGCCCGAGCCGACTTGGCCCGCAGGGGGATGCGCTTCTGAC
ACCCTAACCGAATTCCCGCCTGGACAGCCTGCTCTCTCATTCTCCCATTAAAGAGCCAGT
TTATTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q86TM7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q86TM7_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-369, gnl|bosTau2|chr24 (14657107-14657451)
               

               
               6-369, gnl|Hg17|chr1 (151925795-151925442)
               

               
               6-369, gnl|Mm7|chr3 (89393143-89393486)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-369, gnl|bosTau2|chr24 (14657107-14657451)
               

               
               6-369, gnl|Hg17|chr1 (151925795-151925442)
               

               
               6-369, gnl|Mm7|chr3 (89393143-89393486)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cov (0.528611)
               

               
               cli (0.305623)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               cly (0.241284)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.528611)
               

               
               cli (0.305623)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               cly (0.241284)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	6-369, gnl\|bosTau2\|chr24 (14657107-14657451)
	6-369, gnl\|Hg17\|chr1 (151925795-151925442)
	6-369, gnl\|Mm7\|chr3 (89393143-89393486)

	cov (0.528611)
	cli (0.305623)
	cga (0.279096)
	fce (0.271592)
	cly (0.241284)
	nlu (0.191681)
	mcp (0.170648)
	nco (0.161734)
	csp (0.161186)
	cag (0.151194)
	hyp (0.142837)
	ute (0.132784)
	med (0.116252)
	jca (0.11396)
	eje (0.0988338)