Non-Coding RNA Search

Ss1.1-rhyp10c_m16.5

Sequence:


               
               ACCAGGACAAGCCACTGGCCAGCTCAGACGTGTCTGTATTTCTCTTTTCTTAGCTCAGTG
AGTACTGGGTATGTGTCACACTGCCAAATCCCCGATCACAAGTCTCCATGAACGGGTGGT
GAGCTGGGATAATAAAACCCCTGACATCACCATTCCAGAAGCTTCACAAGACTGCGTATA
TAAGGGGCTGGCTGGAGCTGCAGCTGAAGGAGCTGACCGGCCAGCTGACCCTCTACATCC
ACCCAGCCGCCATGGACATTGCCATCCACCACCCCTGGATCCGCCGCCCCTTCTTTCCTT
TCCACTCTCCCAGCCGCCTCTTTGACCAGTTCTTTGGAGAACACCTGTTGGAGTCTGATC
TCTTCCCAGCTTCTACTTCCCTGAGCCCCTTCTACTTTCGGCCGCCCTCGTTCCTGCGGG
CACCCAGCTGGATTGACACTGGGCTCTCAGAGATGCGTCTGGAGAAGGACAGATTCTCTG
TCAACCTGGATGTGAAGCACTTCTCCCCCGAGGAACTCAAGGTCAAGGTGTTGGGAGATG
TGATTGAGGTGCACGGCAAACATGAAGAGCGCCAGGATGAACATGGTTTCATCTCCCGGG
AGTTCCACAGGAAATACCGGATCCCAGCTGATGTGGACCCTCTCACCATTACTTCATCCC
TGTCATCTGATGGGGTCCTCACTGTGAATGGACCAAGGAGACAGGCCTCTGGCCCCGAGC
GCACCATTCCCATCACCCGTGAAGAGAAGCCTGCTGTCACTGCAGCCCCCAAGAAGTAGA
TGCCCTTCCTCTAACTGCATTTTTTAAAACAAGAAACCTTCCTCATCAGTGAATGAAAAT
CTTGTGACTAGTGCTGAAGCTTATTAATGCTAAGGGCAGGCCCAAATTATTAAGCTAATA
AATATCATTCAGCAACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAGGACAAGCCACTGGCCAGCTCAGACGTGTCTGTATTTCTCTTTTCTTAGCTCAGTG
AGTACTGGGTATGTGTCACACTGCCAAATCCCCGATCACAAGTCTCCATGAACGGGTGGT
GAGCTGGGATAATAAAACCCCTGACATCACCATTCCAGAAGCTTCACAAGACTGCGTATA
TAAGGGGCTGGCTGGAGCTGCAGCTGAAGGAGCTGACCGGCCAGCTGACCCTCTACATCC
ACCCAGCCGCCATGGACATTGCCATCCACCACCCCTGGATCCGCCGCCCCTTCTTTCCTT
TCCACTCTCCCAGCCGCCTCTTTGACCAGTTCTTTGGAGAACACCTGTTGGAGTCTGATC
TCTTCCCAGCTTCTACTTCCCTGAGCCCCTTCTACTTTCGGCCGCCCTCGTTCCTGCGGG
CACCCAGCTGGATTGACACTGGGCTCTCAGAGATGCGTCTGGAGAAGGACAGATTCTCTG
TCAACCTGGATGTGAAGCACTTCTCCCCCGAGGAACTCAAGGTCAAGGTGTTGGGAGATG
TGATTGAGGTGCACGGCAAACATGAAGAGCGCCAGGATGAACATGGTTTCATCTCCCGGG
AGTTCCACAGGAAATACCGGATCCCAGCTGATGTGGACCCTCTCACCATTACTTCATCCC
TGTCATCTGATGGGGTCCTCACTGTGAATGGACCAAGGAGACAGGCCTCTGGCCCCGAGC
GCACCATTCCCATCACCCGTGAAGAGAAGCCTGCTGTCACTGCAGCCCCCAAGAAGTAGA
TGCCCTTCCTCTAACTGCATTTTTTAAAACAAGAAACCTTCCTCATCAGTGAATGAAAAT
CTTGTGACTAGTGCTGAAGCTTATTAATGCTAAGGGCAGGCCCAAATTATTAAGCTAATA
AATATCATTCAGCAACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7441290|pir||JC5971

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7441290|pir||JC5971

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-319, - strand, RNAz p=0.946412
               

               
               804-919, - strand, RNAz p=0.911343

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-319, - strand, RNAz p=0.946412
               

               
               804-919, - strand, RNAz p=0.911343

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-460, gnl|bosTau2|chr15 (8349578-8350037)
               

               
               1-460, gnl|Hg17|chr11 (111287909-111287450)
               

               
               1-460, gnl|Mm7|chr9 (50731610-50732067)
               


               
               574-919, gnl|bosTau2|chr15 (8352768-8353113)
               

               
               574-919, gnl|Hg17|chr11 (111284903-111284557)
               

               
               574-919, gnl|Mm7|chr9 (50734872-50735217)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-460, gnl|bosTau2|chr15 (8349578-8350037)
               

               
               1-460, gnl|Hg17|chr11 (111287909-111287450)
               

               
               1-460, gnl|Mm7|chr9 (50731610-50732067)
               


               
               574-919, gnl|bosTau2|chr15 (8352768-8353113)
               

               
               574-919, gnl|Hg17|chr11 (111284903-111284557)
               

               
               574-919, gnl|Mm7|chr9 (50734872-50735217)

Expressed library(ies): 34 entry(ies)

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Expressed library(ies): 34 entry(ies)

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               mas (4.2061)
               

               
               eye (3.92157)
               

               
               hlv (3.06364)
               

               
               ssp (2.57487)
               

               
               hea (1.84049)
               

               
               nms (1.28315)
               

               
               fhi (1.18704)
               

               
               ste (0.811249)
               

               
               ton (0.702001)
               

               
               ldo (0.582016)
               

               
               nlu (0.575043)
               

               
               nep (0.551775)
               

               
               cag (0.453583)
               

               
               hyp (0.42851)
               

               
               pty (0.428143)
               

               
               che (0.408942)
               

               
               col (0.390016)
               

               
               cly (0.361925)
               

               
               eru (0.360144)
               

               
               bfe (0.299715)
               

               
               ute (0.265569)
               

               
               cov (0.264306)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               nca (0.136874)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

Expressed library(ies): 34 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (4.2061)
               

               
               eye (3.92157)
               

               
               hlv (3.06364)
               

               
               ssp (2.57487)
               

               
               hea (1.84049)
               

               
               nms (1.28315)
               

               
               fhi (1.18704)
               

               
               ste (0.811249)
               

               
               ton (0.702001)
               

               
               ldo (0.582016)
               

               
               nlu (0.575043)
               

               
               nep (0.551775)
               

               
               cag (0.453583)
               

               
               hyp (0.42851)
               

               
               pty (0.428143)
               

               
               che (0.408942)
               

               
               col (0.390016)
               

               
               cly (0.361925)
               

               
               eru (0.360144)
               

               
               bfe (0.299715)
               

               
               ute (0.265569)
               

               
               cov (0.264306)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               nca (0.136874)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

	80-319, - strand, RNAz p=0.946412
	804-919, - strand, RNAz p=0.911343

	1-460, gnl\|bosTau2\|chr15 (8349578-8350037)
	1-460, gnl\|Hg17\|chr11 (111287909-111287450)
	1-460, gnl\|Mm7\|chr9 (50731610-50732067)

	574-919, gnl\|bosTau2\|chr15 (8352768-8353113)
	574-919, gnl\|Hg17\|chr11 (111284903-111284557)
	574-919, gnl\|Mm7\|chr9 (50734872-50735217)

	mas (4.2061)
	eye (3.92157)
	hlv (3.06364)
	ssp (2.57487)
	hea (1.84049)
	nms (1.28315)
	fhi (1.18704)
	ste (0.811249)
	ton (0.702001)
	ldo (0.582016)
	nlu (0.575043)
	nep (0.551775)
	cag (0.453583)
	hyp (0.42851)
	pty (0.428143)
	che (0.408942)
	col (0.390016)
	cly (0.361925)
	eru (0.360144)
	bfe (0.299715)
	ute (0.265569)
	cov (0.264306)
	fcc (0.197785)
	fty (0.17584)
	fbs (0.175346)
	nje (0.16592)
	csp (0.161186)
	cli (0.152812)
	isp (0.150376)
	nca (0.136874)
	cbr (0.127975)
	ese (0.126502)
	pgl (0.118483)
	jca (0.11396)