Non-Coding RNA Search

Ss1.1-rhyp11c_m3.5

Sequence:


               
               AGCTTCTCGCCCACAGCGGGGGACGCCGCCGGCCTGCTCAGCTTCTCCCTTGGGGGCGAT
GGCGAGTGACTCTGGCTGTGGCTGCGGCTGCGGCTGCGACTCTGACTCCGACTGCGGCTC
TGGCTGGGGCTGCGGCTCCGAGTCAGGCTGCGACTTCGGGATGGGCTGAGGGACCAGCTG
CTGCGGCTGCGGCTACTGCTGTGGTGCCGGGGGCCCCGGCCGCCTCGCCTGTACCGGTCT
CCGGAGCGGGAGCGGCTCCTGCTTCTGCGCCGGGGCCCGTAACCAGCACGCCGGGCAGGC
GAACGGGAGTAGCGGTGTCCGTCTCGGGAGCCCCCACCCGAGTGCCGTCGGCTGCGGCTG
TGGGACCTCGAGTAGCGCCGGGAGCGGGACCGAGAGCGCGACCAGGACCGGGAGCGGGAG
CGGGCGTGGCGGCCGGAGCGGTAGTAGCCCCCGCCGCGGCGGGAGCGGGAGCTGGAGCTG
GAGCGGGAGCGGGAGCTGGAGGTCCTCGAGGCGGAAGAGGAGGAGGAGGAGGTGGAGGAG
CGGCGGCGGGCGCTGGCATTACGTCCCGGTGTGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTTCTCGCCCACAGCGGGGGACGCCGCCGGCCTGCTCAGCTTCTCCCTTGGGGGCGAT
GGCGAGTGACTCTGGCTGTGGCTGCGGCTGCGGCTGCGACTCTGACTCCGACTGCGGCTC
TGGCTGGGGCTGCGGCTCCGAGTCAGGCTGCGACTTCGGGATGGGCTGAGGGACCAGCTG
CTGCGGCTGCGGCTACTGCTGTGGTGCCGGGGGCCCCGGCCGCCTCGCCTGTACCGGTCT
CCGGAGCGGGAGCGGCTCCTGCTTCTGCGCCGGGGCCCGTAACCAGCACGCCGGGCAGGC
GAACGGGAGTAGCGGTGTCCGTCTCGGGAGCCCCCACCCGAGTGCCGTCGGCTGCGGCTG
TGGGACCTCGAGTAGCGCCGGGAGCGGGACCGAGAGCGCGACCAGGACCGGGAGCGGGAG
CGGGCGTGGCGGCCGGAGCGGTAGTAGCCCCCGCCGCGGCGGGAGCGGGAGCTGGAGCTG
GAGCGGGAGCGGGAGCTGGAGGTCCTCGAGGCGGAAGAGGAGGAGGAGGAGGTGGAGGAG
CGGCGGCGGGCGCTGGCATTACGTCCCGGTGTGGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-199, + strand, RNAz p=0.874697

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, + strand, RNAz p=0.874697

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               41-166, + strand, RNAmicro p=0.999962

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               41-166, + strand, RNAmicro p=0.999962

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-261, gnl|bosTau2|chr18 (38771582-38771824)
               

               
               1-261, gnl|Hg17|chr19 (50262686-50262432)
               

               
               1-261, gnl|Mm7|chr7 (17267470-17267724)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-261, gnl|bosTau2|chr18 (38771582-38771824)
               

               
               1-261, gnl|Hg17|chr19 (50262686-50262432)
               

               
               1-261, gnl|Mm7|chr7 (17267470-17267724)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               ese (0.126502)

	1-261, gnl\|bosTau2\|chr18 (38771582-38771824)
	1-261, gnl\|Hg17\|chr19 (50262686-50262432)
	1-261, gnl\|Mm7\|chr7 (17267470-17267724)