Non-Coding RNA Search

Ss1.1-rhyp11c_p6.5

Sequence:


               
               CCCCACGAGAAAAATTCATTGTACAACTTGGGACCAGTTACTGAGACCCCTGGCCTCTTC
AAACTACCTCAACTAAGTACATCAGTTGGTCATGGACCAACTCCTAAACCATTGAACCGA
CGCTTTGCACTAGAAAAGAATCTTATAAAAGTAACAGTTGCACCATTTGATCCAAGAGTT
TGTGATGTTGTACTTGATAAGGACAAGACTGATACATCCAAAGATATTGAAAAACCCTCC
TCCCTTGGAGAAGAGATGAGAGAAGATGGTCTTAGTCCAAAGGAGAACACACTTTGCACA
GAATCTGAAGGGATCAGCCCCAGTAACTCTGCCTATAATGGGCCCCCATTCCCTTCTTCA
AACAATAACTTTCAACAAACTGTCTCTGATAAAAATATACCTGACAATAAGAAACCCACA
CCTGCATCCTCTCAGATCTTGGACCATTCAGAGACTCCTAATTTGGGGTCATCCTGGAGA
AACAGGTCACATAAACCAAATCTTGAAGTGAAGTTTCCGGTTGTTTCCAGTTCATCAAAC
AAAAAGGATGTTCTTGACAAGGATTCTGGGAAGCTGAAGGTCCATGAGAAAAGACTAGGC
AAAGTCATTCCTGTTCTGCAAGCCAAAACAAGGACTAATGTTCCGACGTCTTCACCATCA
GATCTAGAAAAGCAGAAGCAAAGTTATCTCCGGAATGTCATAGCTCATATAGAAGACCCA
GTGGACTCCAACCAAGGTGCCTTGGGGGAGCTGTGTACCTTGATGGATCAAGTTCATCAC
ATGCAGAACCAAAAATGGCAGCATCCTTCAGACCTCACCAGGCGTAACTACGCCCGGTTC
CGACAGAAGTCTCTGCAAAGATACAGTCTGACTCAGTGGGTTGACAGGAACATGAGAAGC
CACCATCGGTTCCAGCGTCTACCGGATTTCCAATACAGTTCGTTTGTCTCCTCCCATCAG
CAGTGAAGGTCCCTATCCAGGGTCCTGTCCAGAGCAGCATCTCATCTTCTTCTGTTGTTT
CGTGCTATGTAGATGCTGAATTTTATTTTTCACAACATTTTATTTAAAGAACTTGTCACC
TTTTGGAAATGCCCGTTGCTGACTTGAAATTTTTTTGTATAAGGTGCTTCTTGTTTGTGT
GTGTGCGTGTGTGTGTGTTTGTATGCATTTAAGCAGTGTTGAGTTGATATAGTTTTAATT
TTTTAATTTAAATTGAAGGTGGCTGCCTCTCGAAAGCCAGCATTAAGCCGAAACACCCAG
GTTCGAGCAAAACACCTGTCTCTCTGCAGAGGTGAAGTCTACTTCTGGTGCCCAAAAGAA
ATTATCTTTTAATCTCCTGTGAGGAAGAGATTCTTTATCAGGCTGCAAGCCAGTGTTAAT
TCTTGCTAATTGTTAATCGTAAATGGATACAAGTCACTTTTAACAGCCCCTCTTTCTTAT
TTGAGTCTCTGAATATTTTAAAGTTGGTAATCCAGGACATTTGAAGTATTTGAAAAGACA
AATTAAAAGTGTGTATCTTTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCACGAGAAAAATTCATTGTACAACTTGGGACCAGTTACTGAGACCCCTGGCCTCTTC
AAACTACCTCAACTAAGTACATCAGTTGGTCATGGACCAACTCCTAAACCATTGAACCGA
CGCTTTGCACTAGAAAAGAATCTTATAAAAGTAACAGTTGCACCATTTGATCCAAGAGTT
TGTGATGTTGTACTTGATAAGGACAAGACTGATACATCCAAAGATATTGAAAAACCCTCC
TCCCTTGGAGAAGAGATGAGAGAAGATGGTCTTAGTCCAAAGGAGAACACACTTTGCACA
GAATCTGAAGGGATCAGCCCCAGTAACTCTGCCTATAATGGGCCCCCATTCCCTTCTTCA
AACAATAACTTTCAACAAACTGTCTCTGATAAAAATATACCTGACAATAAGAAACCCACA
CCTGCATCCTCTCAGATCTTGGACCATTCAGAGACTCCTAATTTGGGGTCATCCTGGAGA
AACAGGTCACATAAACCAAATCTTGAAGTGAAGTTTCCGGTTGTTTCCAGTTCATCAAAC
AAAAAGGATGTTCTTGACAAGGATTCTGGGAAGCTGAAGGTCCATGAGAAAAGACTAGGC
AAAGTCATTCCTGTTCTGCAAGCCAAAACAAGGACTAATGTTCCGACGTCTTCACCATCA
GATCTAGAAAAGCAGAAGCAAAGTTATCTCCGGAATGTCATAGCTCATATAGAAGACCCA
GTGGACTCCAACCAAGGTGCCTTGGGGGAGCTGTGTACCTTGATGGATCAAGTTCATCAC
ATGCAGAACCAAAAATGGCAGCATCCTTCAGACCTCACCAGGCGTAACTACGCCCGGTTC
CGACAGAAGTCTCTGCAAAGATACAGTCTGACTCAGTGGGTTGACAGGAACATGAGAAGC
CACCATCGGTTCCAGCGTCTACCGGATTTCCAATACAGTTCGTTTGTCTCCTCCCATCAG
CAGTGAAGGTCCCTATCCAGGGTCCTGTCCAGAGCAGCATCTCATCTTCTTCTGTTGTTT
CGTGCTATGTAGATGCTGAATTTTATTTTTCACAACATTTTATTTAAAGAACTTGTCACC
TTTTGGAAATGCCCGTTGCTGACTTGAAATTTTTTTGTATAAGGTGCTTCTTGTTTGTGT
GTGTGCGTGTGTGTGTGTTTGTATGCATTTAAGCAGTGTTGAGTTGATATAGTTTTAATT
TTTTAATTTAAATTGAAGGTGGCTGCCTCTCGAAAGCCAGCATTAAGCCGAAACACCCAG
GTTCGAGCAAAACACCTGTCTCTCTGCAGAGGTGAAGTCTACTTCTGGTGCCCAAAAGAA
ATTATCTTTTAATCTCCTGTGAGGAAGAGATTCTTTATCAGGCTGCAAGCCAGTGTTAAT
TCTTGCTAATTGTTAATCGTAAATGGATACAAGTCACTTTTAACAGCCCCTCTTTCTTAT
TTGAGTCTCTGAATATTTTAAAGTTGGTAATCCAGGACATTTGAAGTATTTGAAAAGACA
AATTAAAAGTGTGTATCTTTTCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15929485|gb|AAH15175.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15929485|gb|AAH15175.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-555, gnl|bosTau2|chr2 (74099022-74099590)
               

               
               1-555, gnl|Hg17|chr1 (32961076-32961640)
               

               
               1-555, gnl|Mm7|chr4 (128626928-128626375)
               


               
               630-745, gnl|bosTau2|chr2 (74101459-74101574)
               

               
               630-745, gnl|Hg17|chr1 (32964655-32964770)
               

               
               630-745, gnl|Mm7|chr4 (128622982-128622879)
               


               
               826-1524, gnl|bosTau2|chr2 (74123327-74124013)
               

               
               826-1524, gnl|Hg17|chr1 (32990619-32991335)
               

               
               826-1524, gnl|Mm7|chr4 (128595737-128595014)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-555, gnl|bosTau2|chr2 (74099022-74099590)
               

               
               1-555, gnl|Hg17|chr1 (32961076-32961640)
               

               
               1-555, gnl|Mm7|chr4 (128626928-128626375)
               


               
               630-745, gnl|bosTau2|chr2 (74101459-74101574)
               

               
               630-745, gnl|Hg17|chr1 (32964655-32964770)
               

               
               630-745, gnl|Mm7|chr4 (128622982-128622879)
               


               
               826-1524, gnl|bosTau2|chr2 (74123327-74124013)
               

               
               826-1524, gnl|Hg17|chr1 (32990619-32991335)
               

               
               826-1524, gnl|Mm7|chr4 (128595737-128595014)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               tes (0.831255)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.831255)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

	1-555, gnl\|bosTau2\|chr2 (74099022-74099590)
	1-555, gnl\|Hg17\|chr1 (32961076-32961640)
	1-555, gnl\|Mm7\|chr4 (128626928-128626375)

	630-745, gnl\|bosTau2\|chr2 (74101459-74101574)
	630-745, gnl\|Hg17\|chr1 (32964655-32964770)
	630-745, gnl\|Mm7\|chr4 (128622982-128622879)

	826-1524, gnl\|bosTau2\|chr2 (74123327-74124013)
	826-1524, gnl\|Hg17\|chr1 (32990619-32991335)
	826-1524, gnl\|Mm7\|chr4 (128595737-128595014)

	tes (0.831255)
	hyp (0.142837)
	kid (0.129735)
	eru (0.120048)
	pgl (0.118483)