Non-Coding RNA Search

Ss1.1-rhyp12c_m13.5

Sequence:


               
               GGCCGGGACAATCGAGCGGCATCCTGCGGCCTGGGGGCCCAGCGAGATGTCTGAAGGCGA
CGCGCAGCCGGGGCTGTTCCTCTGGCGCAGAAATGGCACCGCGCAAGGGGAAGGAGAAGA
AGGAGGAGCAGGTCATCAGCCTCGGCCCGCAGGTGGCTGAAGGGGAAAACGTGTTCGGCG
TGTGTCACATCTTCGCGTCTTTCAATGACACTTTCGTCCATGTCACCGATCTCTCGGGCA
AGGAGACCATCTGTCGCGTGACGGGCGGGATGAAGGTGAAGGCCGACCGGGATGAGTCCT
CTCCGTACGCCGCTATGCTGGCTGCCCAGGACGTGGCCCAGCGCTGCAAGGAGCTGGGCA
TCACTGCCCTCCACATCAAGCTCCGGGCCACGGGCGGGAACCGGACCAAGACCCCTGGGC
CAGGTGCCCAGTCAGCCCTCAGAGCCCTCGCCCGCTCGGGAATGAAGATTGGGCGGATTG
AGGACGTCACCCCCATCCCCTCCGACAGCACCCGCAGGAAAGGGGGTCGCCGTGGTCGCC
GCCTCTGAACAGGACCCCTCGTGTTACTTTCCGTAATAAACTGCCTTCGCTGAGCTGAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGGGACAATCGAGCGGCATCCTGCGGCCTGGGGGCCCAGCGAGATGTCTGAAGGCGA
CGCGCAGCCGGGGCTGTTCCTCTGGCGCAGAAATGGCACCGCGCAAGGGGAAGGAGAAGA
AGGAGGAGCAGGTCATCAGCCTCGGCCCGCAGGTGGCTGAAGGGGAAAACGTGTTCGGCG
TGTGTCACATCTTCGCGTCTTTCAATGACACTTTCGTCCATGTCACCGATCTCTCGGGCA
AGGAGACCATCTGTCGCGTGACGGGCGGGATGAAGGTGAAGGCCGACCGGGATGAGTCCT
CTCCGTACGCCGCTATGCTGGCTGCCCAGGACGTGGCCCAGCGCTGCAAGGAGCTGGGCA
TCACTGCCCTCCACATCAAGCTCCGGGCCACGGGCGGGAACCGGACCAAGACCCCTGGGC
CAGGTGCCCAGTCAGCCCTCAGAGCCCTCGCCCGCTCGGGAATGAAGATTGGGCGGATTG
AGGACGTCACCCCCATCCCCTCCGACAGCACCCGCAGGAAAGGGGGTCGCCGTGGTCGCC
GCCTCTGAACAGGACCCCTCGTGTTACTTTCCGTAATAAACTGCCTTCGCTGAGCTGAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51873216|gb|AAU12568.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51873216|gb|AAU12568.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               281-443, - strand, RNAz p=0.965899

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               281-443, - strand, RNAz p=0.965899

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               85-639, gnl|bosTau2|chr16 (31329207-31328664)
               

               
               85-639, gnl|Hg17|chr1 (19679906-19680453)
               

               
               85-639, gnl|Mm7|chr3 (53822095-53821554)
               


               
               87-611, gnl|bosTau2|chr14 (40135083-40134581)
               

               
               87-611, gnl|Mm7|chr3 (53822093-53821574)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-639, gnl|bosTau2|chr16 (31329207-31328664)
               

               
               85-639, gnl|Hg17|chr1 (19679906-19680453)
               

               
               85-639, gnl|Mm7|chr3 (53822095-53821554)
               


               
               87-611, gnl|bosTau2|chr14 (40135083-40134581)
               

               
               87-611, gnl|Mm7|chr3 (53822093-53821574)

Expressed library(ies): 60 entry(ies)

More info

Expressed library(ies): 60 entry(ies)

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               ese (4.93359)
               

               
               elu (4.62428)
               

               
               csp (3.86847)
               

               
               cag (3.62867)
               

               
               hlv (3.62067)
               

               
               lnt (3.55771)
               

               
               mcp (3.41297)
               

               
               eje (3.26151)
               

               
               ecc (3.10595)
               

               
               cly (3.01605)
               

               
               fce (2.98751)
               

               
               nlu (2.87522)
               

               
               nca (2.87435)
               

               
               cov (2.64306)
               

               
               eru (2.64106)
               

               
               ece (2.52236)
               

               
               nje (2.4888)
               

               
               med (2.44129)
               

               
               nep (2.39102)
               

               
               ebs (2.36602)
               

               
               ill (2.2827)
               

               
               nco (2.26427)
               

               
               nmm (2.12483)
               

               
               fty (2.11008)
               

               
               pty (1.998)
               

               
               nbm (1.98649)
               

               
               mas (1.89274)
               

               
               eep (1.83846)
               

               
               fli (1.82593)
               

               
               col (1.75507)
               

               
               duo (1.72801)
               

               
               cga (1.67457)
               

               
               eli (1.51814)
               

               
               jca (1.48148)
               

               
               jej (1.3849)
               

               
               cli (1.37531)
               

               
               fhi (1.35662)
               

               
               eye (1.19352)
               

               
               hyp (1.14269)
               

               
               che (1.09051)
               

               
               fcc (0.988924)
               

               
               fbs (0.876732)
               

               
               cst (0.840218)
               

               
               cje (0.826173)
               

               
               ssp (0.813118)
               

               
               ton (0.702001)
               

               
               cut (0.679694)
               

               
               nms (0.641574)
               

               
               pgl (0.592417)
               

               
               ute (0.531138)
               

               
               amn (0.417711)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               clu (0.239292)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               csk (0.140746)

Expressed library(ies): 60 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (4.93359)
               

               
               elu (4.62428)
               

               
               csp (3.86847)
               

               
               cag (3.62867)
               

               
               hlv (3.62067)
               

               
               lnt (3.55771)
               

               
               mcp (3.41297)
               

               
               eje (3.26151)
               

               
               ecc (3.10595)
               

               
               cly (3.01605)
               

               
               fce (2.98751)
               

               
               nlu (2.87522)
               

               
               nca (2.87435)
               

               
               cov (2.64306)
               

               
               eru (2.64106)
               

               
               ece (2.52236)
               

               
               nje (2.4888)
               

               
               med (2.44129)
               

               
               nep (2.39102)
               

               
               ebs (2.36602)
               

               
               ill (2.2827)
               

               
               nco (2.26427)
               

               
               nmm (2.12483)
               

               
               fty (2.11008)
               

               
               pty (1.998)
               

               
               nbm (1.98649)
               

               
               mas (1.89274)
               

               
               eep (1.83846)
               

               
               fli (1.82593)
               

               
               col (1.75507)
               

               
               duo (1.72801)
               

               
               cga (1.67457)
               

               
               eli (1.51814)
               

               
               jca (1.48148)
               

               
               jej (1.3849)
               

               
               cli (1.37531)
               

               
               fhi (1.35662)
               

               
               eye (1.19352)
               

               
               hyp (1.14269)
               

               
               che (1.09051)
               

               
               fcc (0.988924)
               

               
               fbs (0.876732)
               

               
               cst (0.840218)
               

               
               cje (0.826173)
               

               
               ssp (0.813118)
               

               
               ton (0.702001)
               

               
               cut (0.679694)
               

               
               nms (0.641574)
               

               
               pgl (0.592417)
               

               
               ute (0.531138)
               

               
               amn (0.417711)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               clu (0.239292)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               csk (0.140746)

	85-639, gnl\|bosTau2\|chr16 (31329207-31328664)
	85-639, gnl\|Hg17\|chr1 (19679906-19680453)
	85-639, gnl\|Mm7\|chr3 (53822095-53821554)

	87-611, gnl\|bosTau2\|chr14 (40135083-40134581)
	87-611, gnl\|Mm7\|chr3 (53822093-53821574)

	ese (4.93359)
	elu (4.62428)
	csp (3.86847)
	cag (3.62867)
	hlv (3.62067)
	lnt (3.55771)
	mcp (3.41297)
	eje (3.26151)
	ecc (3.10595)
	cly (3.01605)
	fce (2.98751)
	nlu (2.87522)
	nca (2.87435)
	cov (2.64306)
	eru (2.64106)
	ece (2.52236)
	nje (2.4888)
	med (2.44129)
	nep (2.39102)
	ebs (2.36602)
	ill (2.2827)
	nco (2.26427)
	nmm (2.12483)
	fty (2.11008)
	pty (1.998)
	nbm (1.98649)
	mas (1.89274)
	eep (1.83846)
	fli (1.82593)
	col (1.75507)
	duo (1.72801)
	cga (1.67457)
	eli (1.51814)
	jca (1.48148)
	jej (1.3849)
	cli (1.37531)
	fhi (1.35662)
	eye (1.19352)
	hyp (1.14269)
	che (1.09051)
	fcc (0.988924)
	fbs (0.876732)
	cst (0.840218)
	cje (0.826173)
	ssp (0.813118)
	ton (0.702001)
	cut (0.679694)
	nms (0.641574)
	pgl (0.592417)
	ute (0.531138)
	amn (0.417711)
	vin (0.332557)
	cki (0.330469)
	clu (0.239292)
	hea (0.204499)
	sag (0.182715)
	tbr (0.154178)
	fat (0.147427)
	spl (0.143184)
	csk (0.140746)