Non-Coding RNA Search

Ss1.1-rhyp13c_e19.5

Sequence:


               
               AAACATTGCTTTTTTTTTTTTTTTTTTTTTTCCGCAGTAACAGTTGCTCAAAATCCATTC
CACAGTCACAGGCTCTGGGTGGGGGCACCGTGACAATTCAGATGGCCACAGTGACCTTTC
ACCTTGGCCAAAGGCTTGGATGATGATACGGCTCATAGCTGCTCCCCACAATGGCCCTGC
GACATGGGCTGAGCAGACTCACTCCCATCTGACGGATGGAGACACTGAGTCCCAATGAGT
AGAAGCGACTTGCCCAGATTCCTGGAGAGCGCCGGTCACTGAGTCAGACTGGGAGCCCGT
GACAAGGACGCACGAAAACAGAAATGTACCACCTACTGGGGATTCTGCGTTGGTCCCGAT
CTGGGGGAGACAAAGCCTGCAATGCCTAGATGCCAAGACAGAAGATGGGACGAGCTGTTT
ATTCAACAAAAGCCTTTTATTCGTTCAAAAATCAACCATGGCGTTTATTCCGCAGATATT
AAAAAAGCCTCGTGCCGAATTCGGCACGAGGTCCAGCTGCAGGCGCGCTCGGCCGCCCTG
GCGCGCCACGGCCCGGCGGTGGCTGACCTCCTGCTGCAGGCCTACCAGTTCCACGCCGCC
TCGCCGCTGCACTACGCTAAGTTCTTCGACGTCAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACATTGCTTTTTTTTTTTTTTTTTTTTTTCCGCAGTAACAGTTGCTCAAAATCCATTC
CACAGTCACAGGCTCTGGGTGGGGGCACCGTGACAATTCAGATGGCCACAGTGACCTTTC
ACCTTGGCCAAAGGCTTGGATGATGATACGGCTCATAGCTGCTCCCCACAATGGCCCTGC
GACATGGGCTGAGCAGACTCACTCCCATCTGACGGATGGAGACACTGAGTCCCAATGAGT
AGAAGCGACTTGCCCAGATTCCTGGAGAGCGCCGGTCACTGAGTCAGACTGGGAGCCCGT
GACAAGGACGCACGAAAACAGAAATGTACCACCTACTGGGGATTCTGCGTTGGTCCCGAT
CTGGGGGAGACAAAGCCTGCAATGCCTAGATGCCAAGACAGAAGATGGGACGAGCTGTTT
ATTCAACAAAAGCCTTTTATTCGTTCAAAAATCAACCATGGCGTTTATTCCGCAGATATT
AAAAAAGCCTCGTGCCGAATTCGGCACGAGGTCCAGCTGCAGGCGCGCTCGGCCGCCCTG
GCGCGCCACGGCCCGGCGGTGGCTGACCTCCTGCTGCAGGCCTACCAGTTCCACGCCGCC
TCGCCGCTGCACTACGCTAAGTTCTTCGACGTCAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               81-301, - strand, RNAz p=0.980449

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-301, - strand, RNAz p=0.980449

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-301, gnl|bosTau2|chr11 (80769687-80769395)
               

               
               1-301, gnl|Hg17|chr9 (130078911-130078611)
               


               
               340-487, gnl|bosTau2|chr11 (80769299-80769148)
               

               
               340-487, gnl|canFam2|chr9 (57006428-57006075)
               

               
               340-487, gnl|dasNov1|scaffold_51060 (4035-4391)
               

               
               340-487, gnl|echTel1|scaffold_304868 (2862-2505)
               

               
               340-487, gnl|hg17|chr9 (130078161-130078515)
               

               
               340-487, gnl|Hg17|chr9 (130078543-130078388)
               

               
               340-487, gnl|loxAfr1|scaffold_81840 (7752-7422)
               

               
               340-487, gnl|mm7|chr2 (31302487-31302829)
               

               
               340-487, gnl|Mm7|chr2 (31302846-31302709)
               

               
               340-487, gnl|monDom2|scaffold_51 (5372309-5372761)
               

               
               340-487, gnl|oryCun1|scaffold_98372 (5097-5392)
               

               
               340-487, gnl|panTro1|chr11 (115000303-115000658)
               

               
               340-487, gnl|rheMac2|chr15 (8591259-8590904)
               

               
               340-487, gnl|rn3|chr3 (10251380-10251726)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-301, gnl|bosTau2|chr11 (80769687-80769395)
               

               
               1-301, gnl|Hg17|chr9 (130078911-130078611)
               


               
               340-487, gnl|bosTau2|chr11 (80769299-80769148)
               

               
               340-487, gnl|canFam2|chr9 (57006428-57006075)
               

               
               340-487, gnl|dasNov1|scaffold_51060 (4035-4391)
               

               
               340-487, gnl|echTel1|scaffold_304868 (2862-2505)
               

               
               340-487, gnl|hg17|chr9 (130078161-130078515)
               

               
               340-487, gnl|Hg17|chr9 (130078543-130078388)
               

               
               340-487, gnl|loxAfr1|scaffold_81840 (7752-7422)
               

               
               340-487, gnl|mm7|chr2 (31302487-31302829)
               

               
               340-487, gnl|Mm7|chr2 (31302846-31302709)
               

               
               340-487, gnl|monDom2|scaffold_51 (5372309-5372761)
               

               
               340-487, gnl|oryCun1|scaffold_98372 (5097-5392)
               

               
               340-487, gnl|panTro1|chr11 (115000303-115000658)
               

               
               340-487, gnl|rheMac2|chr15 (8591259-8590904)
               

               
               340-487, gnl|rn3|chr3 (10251380-10251726)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               ecc (0.115035)

	1-301, gnl\|bosTau2\|chr11 (80769687-80769395)
	1-301, gnl\|Hg17\|chr9 (130078911-130078611)

	340-487, gnl\|bosTau2\|chr11 (80769299-80769148)
	340-487, gnl\|canFam2\|chr9 (57006428-57006075)
	340-487, gnl\|dasNov1\|scaffold_51060 (4035-4391)
	340-487, gnl\|echTel1\|scaffold_304868 (2862-2505)
	340-487, gnl\|hg17\|chr9 (130078161-130078515)
	340-487, gnl\|Hg17\|chr9 (130078543-130078388)
	340-487, gnl\|loxAfr1\|scaffold_81840 (7752-7422)
	340-487, gnl\|mm7\|chr2 (31302487-31302829)
	340-487, gnl\|Mm7\|chr2 (31302846-31302709)
	340-487, gnl\|monDom2\|scaffold_51 (5372309-5372761)
	340-487, gnl\|oryCun1\|scaffold_98372 (5097-5392)
	340-487, gnl\|panTro1\|chr11 (115000303-115000658)
	340-487, gnl\|rheMac2\|chr15 (8591259-8590904)
	340-487, gnl\|rn3\|chr3 (10251380-10251726)