Non-Coding RNA Search

Ss1.1-rhyp13c_n24.5

Sequence:


               
               TTTTTTTTTTTTTTTTTAAAGTTTTCATCTTTAATGAAATGACTTGGGAAATAACGTACA
CTTCCATGACACCAGTACTACAGTTTTCGGAGTCACAGTAAGATACACAGAATTACGTCC
ATAATTAATATGAATGCCAACATTTCAAGCACCTCGTGCCGAATTCGGCACGAGGGAAGT
GTTCACCTCAGTTGGGGACCAAACTGCTTGGATCTTGGTAAAAAATCGGTTTGGTATGTC
GAGGAGGAGTTCAAGGCCTTTCTGACCACCTTGTGTTCCCCTTTTCTGCGCAGCCATGTA
TCACGTGGTGTGCTCCTAACCACACCCTATGTGCACCCCCCCCCCCATATTTTCTGATTT
CTTCTGGGCTGGGCTTCCCCTTCTCCACCAGCAGCTCCAATATCCCAAACTTTCTAGTCC
TGCTGATCCTCTCAGCAACAGGGGTGGAAACTGGATTGGCAGTTTCTGGTCTGTTTTCTA
AGAAACTTCTGACTTCTATTATCTTTACAAATATAAGATGAGAAGATAATTTTTTCAATA
TTTTTTATTAATCTTTTTATAAAATGAAAAGAAACTCCTATGATTGATTAAGGAAGGTGG
TTATGGCTGGGTGGTTTGTGGGGGTTTTTTGTTTTGTTTTTTTCTTTTTCTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTAAAGTTTTCATCTTTAATGAAATGACTTGGGAAATAACGTACA
CTTCCATGACACCAGTACTACAGTTTTCGGAGTCACAGTAAGATACACAGAATTACGTCC
ATAATTAATATGAATGCCAACATTTCAAGCACCTCGTGCCGAATTCGGCACGAGGGAAGT
GTTCACCTCAGTTGGGGACCAAACTGCTTGGATCTTGGTAAAAAATCGGTTTGGTATGTC
GAGGAGGAGTTCAAGGCCTTTCTGACCACCTTGTGTTCCCCTTTTCTGCGCAGCCATGTA
TCACGTGGTGTGCTCCTAACCACACCCTATGTGCACCCCCCCCCCCATATTTTCTGATTT
CTTCTGGGCTGGGCTTCCCCTTCTCCACCAGCAGCTCCAATATCCCAAACTTTCTAGTCC
TGCTGATCCTCTCAGCAACAGGGGTGGAAACTGGATTGGCAGTTTCTGGTCTGTTTTCTA
AGAAACTTCTGACTTCTATTATCTTTACAAATATAAGATGAGAAGATAATTTTTTCAATA
TTTTTTATTAATCTTTTTATAAAATGAAAAGAAACTCCTATGATTGATTAAGGAAGGTGG
TTATGGCTGGGTGGTTTGTGGGGGTTTTTTGTTTTGTTTTTTTCTTTTTCTTTTTTTTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               32-151, - strand, RNAz p=0.697178
               

               
               295-446, - strand, RNAz p=0.882045

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               32-151, - strand, RNAz p=0.697178
               

               
               295-446, - strand, RNAz p=0.882045

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_001002256, -

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001002256, -

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               6-151, gnl|bosTau2|chr2 (73088926-73089071)
               

               
               6-151, gnl|Hg17|chr2 (175868379-175868514)
               

               
               6-151, gnl|Mm7|chr2 (73752180-73752298)
               


               
               176-660, gnl|bosTau2|chr3 (76620450-76619960)
               

               
               176-660, gnl|Hg17|chr1 (36439250-36439718)
               

               
               176-660, gnl|Mm7|chr4 (125609517-125609059)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-151, gnl|bosTau2|chr2 (73088926-73089071)
               

               
               6-151, gnl|Hg17|chr2 (175868379-175868514)
               

               
               6-151, gnl|Mm7|chr2 (73752180-73752298)
               


               
               176-660, gnl|bosTau2|chr3 (76620450-76619960)
               

               
               176-660, gnl|Hg17|chr1 (36439250-36439718)
               

               
               176-660, gnl|Mm7|chr4 (125609517-125609059)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)

	32-151, - strand, RNAz p=0.697178
	295-446, - strand, RNAz p=0.882045

	6-151, gnl\|bosTau2\|chr2 (73088926-73089071)
	6-151, gnl\|Hg17\|chr2 (175868379-175868514)
	6-151, gnl\|Mm7\|chr2 (73752180-73752298)

	176-660, gnl\|bosTau2\|chr3 (76620450-76619960)
	176-660, gnl\|Hg17\|chr1 (36439250-36439718)
	176-660, gnl\|Mm7\|chr4 (125609517-125609059)