Ss1.1-rhyp13c_n7.5
|
TCAGGATTCCCAGGCTGAAACCAGCCACCACAGCTGACACAACAGCTGTCTCCACAAGCG
CAGCAACAGCCCCTTTACTGCCCACAGACTGCTCCCACCCTCACACGCTCCTGCACCGAG
ACAATGGCTATCAGCGGCCACCCGCATTGCCACCCGGGCCCGGGGTCCAGGCTCACAGGT
AACCCTCCGCGTGTTACTGTCCATCACTGCAAACATCCATCCTGATCCTGGCACCAGAGC
AGGAGACCCAAGTGTCCACTGCCCGGAGGCCACAATATCAGCCCACACTATCAAAGAACA
CTAACTGGAAGGCCAGGGCTGTCATGGAACTCAGCTCACAAGTGCAGGGAGGTGTGTCTG
GAGAGCATCCTGACTGCGTTGCAGCTCATCCATTAAGTGGTTTCAGTCAAAACTGGAAAA
TAGCAATTAAGTTGCAGTCGTTCTTGTTCCTGGTTCAGGCCTCCCCCTTTCTTGCAGTAT
TTGAGGAACTGCATCATTGCAAAGGGTTTCCACCGGAAACCTCTGAGGCCTGTCGTTAAA
AAGCTGCACATGTTTACAAACGAGCTCTTCCCCTCCACGAGAACACGTTGCTCTGGGACT
CCCATGGGAAAATGTCATGACTCTGTGACAACAGGACGGCAGTCTCAGATCTGCAAGGTG
CTGTCTGGACTCAGCATGTTAGTGGCGATCGTGTTTCGCAGAGCTTTGTGCCAACCACCA
AGACAAGCTTTCACCAAGTTCCCGGAATCACCGAGACGGGAAAGGTTACCTCTCCGCATT
GCGCCGTAAGGAAATTTGCTCATTGGGAAGGAGGAAGAAGCACTTAGGAAAGGGTTTAGT
TGCTACCAAAAAATACTTAACCTCGAGTAATAGTAATACAAACTTGCTTTAAAGGAACCA
AAGGCATTGCCAAGTATTTGCCAAAAGCAGGCACTTTTTATGTAAAATTTGAGACGAATG
AGATCTCAAAAATCAGTCCCAAAAAGGTATTATCCACTTAAGGTTATAATTTTCACAGAG
ATGTAGATATTTCTCTCTTGTTTTCATGTAAAATAGTATAGATTTGTTTTGTTGGGTTAA
GAATAGTACACAGTTAGCAGAAATAAAGTTTTTTTTTTCTTTTCTACGTACAAATTAGTT
TTCTTGCTTGCAACAGAACTGCAACGTGATAGGTGTTTCTCTTCTTATTTTCATTGTCAC
ATTATGTCTTAGCATCTCACTCTATGAAAAAAAGGAGAAAGATACCAATCCACAGAGCCC
TGCTTCTTAAAGCACTAGTTTAATAACAAAAAATTATGGCAGTCGGGGGTCCATTCATGT
ATTGCCTTTATGTTGTTTTTTAAAAGAAAAACCATGATGCCTTTGTATTTGCTGTTTGCA
CCCCTGAAATCAATTCCATATCATGTTTGAATGCCATACATTTTGCACATGTACTGTACA
TAAGTAACGCATACTGTATTTTTATATGTGTGCACATTTATCATCGGATCTTTTGTACAT
AGTGGCTGTATTGTAGCTGATTGGGAAATGTTTGATATCTCAGCAATTTTGCATTTTTGT
GTCTCAAATAAAAAACATTTTGAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCAGGATTCCCAGGCTGAAACCAGCCACCACAGCTGACACAACAGCTGTCTCCACAAGCG
CAGCAACAGCCCCTTTACTGCCCACAGACTGCTCCCACCCTCACACGCTCCTGCACCGAG
ACAATGGCTATCAGCGGCCACCCGCATTGCCACCCGGGCCCGGGGTCCAGGCTCACAGGT
AACCCTCCGCGTGTTACTGTCCATCACTGCAAACATCCATCCTGATCCTGGCACCAGAGC
AGGAGACCCAAGTGTCCACTGCCCGGAGGCCACAATATCAGCCCACACTATCAAAGAACA
CTAACTGGAAGGCCAGGGCTGTCATGGAACTCAGCTCACAAGTGCAGGGAGGTGTGTCTG
GAGAGCATCCTGACTGCGTTGCAGCTCATCCATTAAGTGGTTTCAGTCAAAACTGGAAAA
TAGCAATTAAGTTGCAGTCGTTCTTGTTCCTGGTTCAGGCCTCCCCCTTTCTTGCAGTAT
TTGAGGAACTGCATCATTGCAAAGGGTTTCCACCGGAAACCTCTGAGGCCTGTCGTTAAA
AAGCTGCACATGTTTACAAACGAGCTCTTCCCCTCCACGAGAACACGTTGCTCTGGGACT
CCCATGGGAAAATGTCATGACTCTGTGACAACAGGACGGCAGTCTCAGATCTGCAAGGTG
CTGTCTGGACTCAGCATGTTAGTGGCGATCGTGTTTCGCAGAGCTTTGTGCCAACCACCA
AGACAAGCTTTCACCAAGTTCCCGGAATCACCGAGACGGGAAAGGTTACCTCTCCGCATT
GCGCCGTAAGGAAATTTGCTCATTGGGAAGGAGGAAGAAGCACTTAGGAAAGGGTTTAGT
TGCTACCAAAAAATACTTAACCTCGAGTAATAGTAATACAAACTTGCTTTAAAGGAACCA
AAGGCATTGCCAAGTATTTGCCAAAAGCAGGCACTTTTTATGTAAAATTTGAGACGAATG
AGATCTCAAAAATCAGTCCCAAAAAGGTATTATCCACTTAAGGTTATAATTTTCACAGAG
ATGTAGATATTTCTCTCTTGTTTTCATGTAAAATAGTATAGATTTGTTTTGTTGGGTTAA
GAATAGTACACAGTTAGCAGAAATAAAGTTTTTTTTTTCTTTTCTACGTACAAATTAGTT
TTCTTGCTTGCAACAGAACTGCAACGTGATAGGTGTTTCTCTTCTTATTTTCATTGTCAC
ATTATGTCTTAGCATCTCACTCTATGAAAAAAAGGAGAAAGATACCAATCCACAGAGCCC
TGCTTCTTAAAGCACTAGTTTAATAACAAAAAATTATGGCAGTCGGGGGTCCATTCATGT
ATTGCCTTTATGTTGTTTTTTAAAAGAAAAACCATGATGCCTTTGTATTTGCTGTTTGCA
CCCCTGAAATCAATTCCATATCATGTTTGAATGCCATACATTTTGCACATGTACTGTACA
TAAGTAACGCATACTGTATTTTTATATGTGTGCACATTTATCATCGGATCTTTTGTACAT
AGTGGCTGTATTGTAGCTGATTGGGAAATGTTTGATATCTCAGCAATTTTGCATTTTTGT
GTCTCAAATAAAAAACATTTTGAT
|
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
sme (0.610874) |
|
tra (0.369276) |
|
sag (0.36543) |
|
fat (0.294855) |
|
cmu (0.186393) |
|
rec (0.17307) |
|
cje (0.165235) |
|
cki (0.165235) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
liv (0.146284) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
kid (0.129735) |
|
ret (0.128733) |
|
eje (0.0988338) |
|
sme (0.610874) |
|
tra (0.369276) |
|
sag (0.36543) |
|
fat (0.294855) |
|
cmu (0.186393) |
|
rec (0.17307) |
|
cje (0.165235) |
|
cki (0.165235) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
liv (0.146284) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
kid (0.129735) |
|
ret (0.128733) |
|
eje (0.0988338) |