Non-Coding RNA Search

Ss1.1-rhyp14c_c17.5

Sequence:


               
               TGAAGACTACGAAAATGACTTTGAAGACTCTGACAAGGATCACCATAACAGCACCTACGA
CGACGAGGTAGAGAACATCTTCGAAGAAGAATCATCAGTGGAGGAAGAAGAGGAGGAGGG
CAGTGAGGAAGCCAGCGAGCAGGAAGGTGAAGACAGCGATGATGAGGAAGGAAGTGAGGA
AGAGGAAGGAATCGAAGAAGATTCAGAAGGAGGGGAAGACTCAGAAGACTCTGACATGGA
GGAGGTGCTTCAGGTCCAAAATCCTTGGGCCAACCCTGGGAAGAGGGGCAAAATGGGATA
AAACGTCTTACCCTTGCGGGGGCTGCCTCTCTGTATCCCTTTCCCCCTGCCCCACTTGCC
CTCCCTATCAGCTAGGGCCGAGCGGCCCCACATTGCACTTCTGGGGGGTGACTGACTTCA
CTTCGTACACGGGTTTAAAGTTTATTTTTATGGTTTAGTAATTGCAGAGTTCTTATTTTG
GGGGGAGGGTAAGGGGGATTGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGACTACGAAAATGACTTTGAAGACTCTGACAAGGATCACCATAACAGCACCTACGA
CGACGAGGTAGAGAACATCTTCGAAGAAGAATCATCAGTGGAGGAAGAAGAGGAGGAGGG
CAGTGAGGAAGCCAGCGAGCAGGAAGGTGAAGACAGCGATGATGAGGAAGGAAGTGAGGA
AGAGGAAGGAATCGAAGAAGATTCAGAAGGAGGGGAAGACTCAGAAGACTCTGACATGGA
GGAGGTGCTTCAGGTCCAAAATCCTTGGGCCAACCCTGGGAAGAGGGGCAAAATGGGATA
AAACGTCTTACCCTTGCGGGGGCTGCCTCTCTGTATCCCTTTCCCCCTGCCCCACTTGCC
CTCCCTATCAGCTAGGGCCGAGCGGCCCCACATTGCACTTCTGGGGGGTGACTGACTTCA
CTTCGTACACGGGTTTAAAGTTTATTTTTATGGTTTAGTAATTGCAGAGTTCTTATTTTG
GGGGGAGGGTAAGGGGGATTGCCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               187-401, - strand, RNAz p=0.959245
               

               
               213-401, + strand, RNAz p=0.977847

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               187-401, - strand, RNAz p=0.959245
               

               
               213-401, + strand, RNAz p=0.977847

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC024270, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC024270, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               182-504, gnl|bosTau2|chr25 (14027441-14027131)
               

               
               182-504, gnl|canFam2|chrX (44865028-44865733)
               

               
               182-504, gnl|echTel1|scaffold_317711 (38505-39009)
               

               
               182-504, gnl|hg17|chrX (52999684-53000285)
               

               
               182-504, gnl|Hg17|chrX (53000005-53000339)
               

               
               182-504, gnl|loxAfr1|scaffold_17439 (41453-40879)
               

               
               182-504, gnl|mm7|chrX (147096523-147095954)
               

               
               182-504, gnl|Mm7|chrX (147096215-147095909)
               

               
               182-504, gnl|oryCun1|scaffold_203137 (52683-53316)
               

               
               182-504, gnl|panTro1|chrX (54241495-54242096)
               

               
               182-504, gnl|rheMac2|chrX (51410626-51411224)
               

               
               182-504, gnl|rn3|chrX (41891132-41890575)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               182-504, gnl|bosTau2|chr25 (14027441-14027131)
               

               
               182-504, gnl|canFam2|chrX (44865028-44865733)
               

               
               182-504, gnl|echTel1|scaffold_317711 (38505-39009)
               

               
               182-504, gnl|hg17|chrX (52999684-53000285)
               

               
               182-504, gnl|Hg17|chrX (53000005-53000339)
               

               
               182-504, gnl|loxAfr1|scaffold_17439 (41453-40879)
               

               
               182-504, gnl|mm7|chrX (147096523-147095954)
               

               
               182-504, gnl|Mm7|chrX (147096215-147095909)
               

               
               182-504, gnl|oryCun1|scaffold_203137 (52683-53316)
               

               
               182-504, gnl|panTro1|chrX (54241495-54242096)
               

               
               182-504, gnl|rheMac2|chrX (51410626-51411224)
               

               
               182-504, gnl|rn3|chrX (41891132-41890575)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	187-401, - strand, RNAz p=0.959245
	213-401, + strand, RNAz p=0.977847

	182-504, gnl\|bosTau2\|chr25 (14027441-14027131)
	182-504, gnl\|canFam2\|chrX (44865028-44865733)
	182-504, gnl\|echTel1\|scaffold_317711 (38505-39009)
	182-504, gnl\|hg17\|chrX (52999684-53000285)
	182-504, gnl\|Hg17\|chrX (53000005-53000339)
	182-504, gnl\|loxAfr1\|scaffold_17439 (41453-40879)
	182-504, gnl\|mm7\|chrX (147096523-147095954)
	182-504, gnl\|Mm7\|chrX (147096215-147095909)
	182-504, gnl\|oryCun1\|scaffold_203137 (52683-53316)
	182-504, gnl\|panTro1\|chrX (54241495-54242096)
	182-504, gnl\|rheMac2\|chrX (51410626-51411224)
	182-504, gnl\|rn3\|chrX (41891132-41890575)