Non-Coding RNA Search

Ss1.1-rhyp14c_d16.5

Sequence:


               
               AGCCGGGGTTTCGGCAATGCGGGGAGCCCAGGGAGTTGCCGTTTGGATTTTTTTGCTCCC
CGGCCATCTTGGCGGCTGCTTGTGGTTGGGGGCGTCCCGCGCCTAAGGCAGGAAGATGGT
GGCCGCAAAGAAGACGAAAAAGTCGCTGGAGTCAATCAACTCTCGGCTCCAGCTGGTTAT
GAAAAGTGGAAAGTACGTGCTGGGGTACAAGCAGACTCTGAAAATGATCAGACAAGGCAA
AGCGAAACTGGTCATCCTCGCCAACAACTGCCCAGCCTTGAGGAAATCTGAAATAGAATA
TTATGCCATGTTGGCCAAAACTGGTGTCCATCACTACAGTGGAAATAATATTGAATTGGG
CACAGCATGTGGAAAATACTACAGAGTATGCACACTGGCTATCATTGATCCAGGTGATTC
TGATATCATTAGAAGCATGCCAGAACAGACTGGTGAAAAGTAAATCATGCACAGTTTTTC
TTTAATAAAGCCAGCCAGCGCTCATTTTAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCGGGGTTTCGGCAATGCGGGGAGCCCAGGGAGTTGCCGTTTGGATTTTTTTGCTCCC
CGGCCATCTTGGCGGCTGCTTGTGGTTGGGGGCGTCCCGCGCCTAAGGCAGGAAGATGGT
GGCCGCAAAGAAGACGAAAAAGTCGCTGGAGTCAATCAACTCTCGGCTCCAGCTGGTTAT
GAAAAGTGGAAAGTACGTGCTGGGGTACAAGCAGACTCTGAAAATGATCAGACAAGGCAA
AGCGAAACTGGTCATCCTCGCCAACAACTGCCCAGCCTTGAGGAAATCTGAAATAGAATA
TTATGCCATGTTGGCCAAAACTGGTGTCCATCACTACAGTGGAAATAATATTGAATTGGG
CACAGCATGTGGAAAATACTACAGAGTATGCACACTGGCTATCATTGATCCAGGTGATTC
TGATATCATTAGAAGCATGCCAGAACAGACTGGTGAAAAGTAAATCATGCACAGTTTTTC
TTTAATAAAGCCAGCCAGCGCTCATTTTAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|488415|emb|CAA55820.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|488415|emb|CAA55820.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               91-209, - strand, RNAz p=0.513804
               

               
               290-489, - strand, RNAz p=0.643796

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               91-209, - strand, RNAz p=0.513804
               

               
               290-489, - strand, RNAz p=0.643796

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               49-539, gnl|bosTau2|chr1 (51883169-51883658)
               

               
               49-539, gnl|Hg17|chr8 (113620226-113621005)
               

               
               49-539, gnl|Mm7|chrX (67190269-67190773)
               


               
               56-529, gnl|bosTau2|chr15 (16258338-16258811)
               

               
               56-529, gnl|Hg17|chr18 (57223479-57223012)
               

               
               56-529, gnl|Mm7|chr11 (49635875-49635432)
               


               
               67-507, gnl|bosTau2|chr11 (71065426-71065001)
               

               
               67-507, gnl|Hg17|chr3 (32652090-32651667)
               

               
               67-507, gnl|Mm7|chr11 (49635880-49635424)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-539, gnl|bosTau2|chr1 (51883169-51883658)
               

               
               49-539, gnl|Hg17|chr8 (113620226-113621005)
               

               
               49-539, gnl|Mm7|chrX (67190269-67190773)
               


               
               56-529, gnl|bosTau2|chr15 (16258338-16258811)
               

               
               56-529, gnl|Hg17|chr18 (57223479-57223012)
               

               
               56-529, gnl|Mm7|chr11 (49635875-49635432)
               


               
               67-507, gnl|bosTau2|chr11 (71065426-71065001)
               

               
               67-507, gnl|Hg17|chr3 (32652090-32651667)
               

               
               67-507, gnl|Mm7|chr11 (49635880-49635424)

Expressed library(ies): 82 entry(ies)

More info

Expressed library(ies): 82 entry(ies)

Help | Less info


               
               eru (2.52101)
               

               
               ese (2.40354)
               

               
               nms (2.35244)
               

               
               nca (2.32685)
               

               
               nlu (2.30017)
               

               
               nep (2.2071)
               

               
               lnt (2.13462)
               

               
               hlv (2.08885)
               

               
               eje (2.07551)
               

               
               duo (2.07361)
               

               
               mcp (2.04778)
               

               
               eye (2.04604)
               

               
               elu (1.92678)
               

               
               cmu (1.86393)
               

               
               pty (1.85529)
               

               
               ece (1.83444)
               

               
               fty (1.7584)
               

               
               csk (1.68895)
               

               
               nje (1.6592)
               

               
               med (1.62753)
               

               
               eep (1.59333)
               

               
               ton (1.5795)
               

               
               ecc (1.49546)
               

               
               ill (1.40474)
               

               
               cst (1.40036)
               

               
               cga (1.39548)
               

               
               che (1.36314)
               

               
               nco (1.29387)
               

               
               mas (1.26183)
               

               
               amn (1.25313)
               

               
               cag (1.20956)
               

               
               jej (1.18706)
               

               
               csp (1.1283)
               

               
               ebs (1.06471)
               

               
               fbs (1.05208)
               

               
               rec (1.03842)
               

               
               jca (1.02564)
               

               
               fhi (1.01747)
               

               
               hyp (0.999857)
               

               
               nbm (0.993246)
               

               
               sag (0.913576)
               

               
               eli (0.910885)
               

               
               kid (0.908147)
               

               
               ova (0.903926)
               

               
               pgl (0.829384)
               

               
               fce (0.814775)
               

               
               fli (0.811524)
               

               
               nmm (0.796813)
               

               
               fat (0.737137)
               

               
               cly (0.723851)
               

               
               sto (0.719295)
               

               
               cki (0.660939)
               

               
               thg (0.633955)
               

               
               sme (0.610874)
               

               
               pla (0.534688)
               

               
               gul (0.532765)
               

               
               pro (0.512033)
               

               
               cut (0.509771)
               

               
               cje (0.495704)
               

               
               cbe (0.478469)
               

               
               spc (0.453463)
               

               
               ssp (0.406559)
               

               
               fcc (0.39557)
               

               
               col (0.390016)
               

               
               sug (0.381874)
               

               
               mgm (0.360685)
               

               
               sin (0.349895)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               ute (0.265569)
               

               
               cov (0.264306)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ldo (0.0970026)

Expressed library(ies): 82 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (2.52101)
               

               
               ese (2.40354)
               

               
               nms (2.35244)
               

               
               nca (2.32685)
               

               
               nlu (2.30017)
               

               
               nep (2.2071)
               

               
               lnt (2.13462)
               

               
               hlv (2.08885)
               

               
               eje (2.07551)
               

               
               duo (2.07361)
               

               
               mcp (2.04778)
               

               
               eye (2.04604)
               

               
               elu (1.92678)
               

               
               cmu (1.86393)
               

               
               pty (1.85529)
               

               
               ece (1.83444)
               

               
               fty (1.7584)
               

               
               csk (1.68895)
               

               
               nje (1.6592)
               

               
               med (1.62753)
               

               
               eep (1.59333)
               

               
               ton (1.5795)
               

               
               ecc (1.49546)
               

               
               ill (1.40474)
               

               
               cst (1.40036)
               

               
               cga (1.39548)
               

               
               che (1.36314)
               

               
               nco (1.29387)
               

               
               mas (1.26183)
               

               
               amn (1.25313)
               

               
               cag (1.20956)
               

               
               jej (1.18706)
               

               
               csp (1.1283)
               

               
               ebs (1.06471)
               

               
               fbs (1.05208)
               

               
               rec (1.03842)
               

               
               jca (1.02564)
               

               
               fhi (1.01747)
               

               
               hyp (0.999857)
               

               
               nbm (0.993246)
               

               
               sag (0.913576)
               

               
               eli (0.910885)
               

               
               kid (0.908147)
               

               
               ova (0.903926)
               

               
               pgl (0.829384)
               

               
               fce (0.814775)
               

               
               fli (0.811524)
               

               
               nmm (0.796813)
               

               
               fat (0.737137)
               

               
               cly (0.723851)
               

               
               sto (0.719295)
               

               
               cki (0.660939)
               

               
               thg (0.633955)
               

               
               sme (0.610874)
               

               
               pla (0.534688)
               

               
               gul (0.532765)
               

               
               pro (0.512033)
               

               
               cut (0.509771)
               

               
               cje (0.495704)
               

               
               cbe (0.478469)
               

               
               spc (0.453463)
               

               
               ssp (0.406559)
               

               
               fcc (0.39557)
               

               
               col (0.390016)
               

               
               sug (0.381874)
               

               
               mgm (0.360685)
               

               
               sin (0.349895)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               ute (0.265569)
               

               
               cov (0.264306)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ldo (0.0970026)

	91-209, - strand, RNAz p=0.513804
	290-489, - strand, RNAz p=0.643796

	49-539, gnl\|bosTau2\|chr1 (51883169-51883658)
	49-539, gnl\|Hg17\|chr8 (113620226-113621005)
	49-539, gnl\|Mm7\|chrX (67190269-67190773)

	56-529, gnl\|bosTau2\|chr15 (16258338-16258811)
	56-529, gnl\|Hg17\|chr18 (57223479-57223012)
	56-529, gnl\|Mm7\|chr11 (49635875-49635432)

	67-507, gnl\|bosTau2\|chr11 (71065426-71065001)
	67-507, gnl\|Hg17\|chr3 (32652090-32651667)
	67-507, gnl\|Mm7\|chr11 (49635880-49635424)

	eru (2.52101)
	ese (2.40354)
	nms (2.35244)
	nca (2.32685)
	nlu (2.30017)
	nep (2.2071)
	lnt (2.13462)
	hlv (2.08885)
	eje (2.07551)
	duo (2.07361)
	mcp (2.04778)
	eye (2.04604)
	elu (1.92678)
	cmu (1.86393)
	pty (1.85529)
	ece (1.83444)
	fty (1.7584)
	csk (1.68895)
	nje (1.6592)
	med (1.62753)
	eep (1.59333)
	ton (1.5795)
	ecc (1.49546)
	ill (1.40474)
	cst (1.40036)
	cga (1.39548)
	che (1.36314)
	nco (1.29387)
	mas (1.26183)
	amn (1.25313)
	cag (1.20956)
	jej (1.18706)
	csp (1.1283)
	ebs (1.06471)
	fbs (1.05208)
	rec (1.03842)
	jca (1.02564)
	fhi (1.01747)
	hyp (0.999857)
	nbm (0.993246)
	sag (0.913576)
	eli (0.910885)
	kid (0.908147)
	ova (0.903926)
	pgl (0.829384)
	fce (0.814775)
	fli (0.811524)
	nmm (0.796813)
	fat (0.737137)
	cly (0.723851)
	sto (0.719295)
	cki (0.660939)
	thg (0.633955)
	sme (0.610874)
	pla (0.534688)
	gul (0.532765)
	pro (0.512033)
	cut (0.509771)
	cje (0.495704)
	cbe (0.478469)
	spc (0.453463)
	ssp (0.406559)
	fcc (0.39557)
	col (0.390016)
	sug (0.381874)
	mgm (0.360685)
	sin (0.349895)
	spl (0.286369)
	lyg (0.266205)
	ute (0.265569)
	cov (0.264306)
	ret (0.257467)
	bla (0.248694)
	mgp (0.230681)
	cty (0.20816)
	aor (0.195274)
	mga (0.160205)
	fco (0.157208)
	cli (0.152812)
	isp (0.150376)
	bfe (0.149858)
	ldo (0.0970026)