Non-Coding RNA Search

Ss1.1-rhyp15c_i23.5

Sequence:


               
               CCTTGCTCGACAGGAAGCTGGAGGCCCTTCAGGAGGACGTGCCCACGGCCTCGCCGGGTT
TCCGCGGCACAGACTGTGTGCTGACCTCAGGTGAAATCGCTCAGATGATGGAGCAGAGTG
ACCTCTCGGTGAGAGATGCTGCCCTGGACACCCTGTTTGGAGACGTGAGGGAAGTGGTGA
GACGCCACGACGGAGCCAGCTCCGACGGGTGCCTGGCGCACATCTTCAGACACGCCGCCA
AGGAGCTATTCGACGAGGACGTGGGGGAGCTCACCTACCGGGCCCTGAGGAACAGAGACT
TTCAGGAGGTGACCCTCGAGAAGAGCGGGAAGGTTCTCCTGCGCTTTGCTGCCGCCTACG
GCTTCCGAAACATCCAGAACGTGGTCCTGAAGCTGAAGAGGGGCAGGTTCCCGTACCACT
TTGTGGAGGTCCTCGCCTGCGCAGGGGGGTGCCTCAACGGCAGGGGCCAGGCCCAGACGG
AGGACGGGCGGGCGGATAAGGCCCTGCTGCAGAGGATGAGAGGCGTCCACGCCGCCGGCC
CCGGGCGGACCCCAGAGACCAGCGCCCACGTGCAGGACCTGTACCGGGAGTGGCTGGACG
GCGCCGACGCCCCCCGGGCCCGGGGAACCCTGCACACGGCGCACCAGGGCCCCGGGCGCC
CCGCCGACGGCCGAGACATCAAGTGGTGACGGCGGCGGGGAGGCTCGGAGGATGGATGGG
CCCCGCGCGTGGGTACCGGAGACCCGTGACGGAAACAGCGTGGCTTTTCTGCGGCTCCTT
CGCGTTGTCAGAGTTCTCTGCTGCCCGCGTTTGTCGGCAGCTCCCCCCTCAGTTCCGTGT
GGTGCTACCTTCGTGCCGTGTGTGTGGTTGCAGTGTTTTAACGTGAGAGGAGGGCTGCCC
GGTGTCGGTCTCCTTTCGACTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTGCTCGACAGGAAGCTGGAGGCCCTTCAGGAGGACGTGCCCACGGCCTCGCCGGGTT
TCCGCGGCACAGACTGTGTGCTGACCTCAGGTGAAATCGCTCAGATGATGGAGCAGAGTG
ACCTCTCGGTGAGAGATGCTGCCCTGGACACCCTGTTTGGAGACGTGAGGGAAGTGGTGA
GACGCCACGACGGAGCCAGCTCCGACGGGTGCCTGGCGCACATCTTCAGACACGCCGCCA
AGGAGCTATTCGACGAGGACGTGGGGGAGCTCACCTACCGGGCCCTGAGGAACAGAGACT
TTCAGGAGGTGACCCTCGAGAAGAGCGGGAAGGTTCTCCTGCGCTTTGCTGCCGCCTACG
GCTTCCGAAACATCCAGAACGTGGTCCTGAAGCTGAAGAGGGGCAGGTTCCCGTACCACT
TTGTGGAGGTCCTCGCCTGCGCAGGGGGGTGCCTCAACGGCAGGGGCCAGGCCCAGACGG
AGGACGGGCGGGCGGATAAGGCCCTGCTGCAGAGGATGAGAGGCGTCCACGCCGCCGGCC
CCGGGCGGACCCCAGAGACCAGCGCCCACGTGCAGGACCTGTACCGGGAGTGGCTGGACG
GCGCCGACGCCCCCCGGGCCCGGGGAACCCTGCACACGGCGCACCAGGGCCCCGGGCGCC
CCGCCGACGGCCGAGACATCAAGTGGTGACGGCGGCGGGGAGGCTCGGAGGATGGATGGG
CCCCGCGCGTGGGTACCGGAGACCCGTGACGGAAACAGCGTGGCTTTTCTGCGGCTCCTT
CGCGTTGTCAGAGTTCTCTGCTGCCCGCGTTTGTCGGCAGCTCCCCCCTCAGTTCCGTGT
GGTGCTACCTTCGTGCCGTGTGTGTGGTTGCAGTGTTTTAACGTGAGAGGAGGGCTGCCC
GGTGTCGGTCTCCTTTCGACTGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16741189|gb|AAH16440.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16741189|gb|AAH16440.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               155-290, gnl|bosTau2|chr19 (47472822-47472684)
               

               
               155-290, gnl|Hg17|chr17 (78035978-78036116)
               

               
               155-290, gnl|Mm7|chr11 (121359338-121359476)
               


               
               447-924, gnl|bosTau2|chr19 (47471366-47470865)
               

               
               447-924, gnl|Hg17|chr17 (78039080-78039903)
               

               
               447-924, gnl|Mm7|chr11 (121361725-121362172)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               155-290, gnl|bosTau2|chr19 (47472822-47472684)
               

               
               155-290, gnl|Hg17|chr17 (78035978-78036116)
               

               
               155-290, gnl|Mm7|chr11 (121359338-121359476)
               


               
               447-924, gnl|bosTau2|chr19 (47471366-47470865)
               

               
               447-924, gnl|Hg17|chr17 (78039080-78039903)
               

               
               447-924, gnl|Mm7|chr11 (121361725-121362172)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.285673)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)

	155-290, gnl\|bosTau2\|chr19 (47472822-47472684)
	155-290, gnl\|Hg17\|chr17 (78035978-78036116)
	155-290, gnl\|Mm7\|chr11 (121359338-121359476)

	447-924, gnl\|bosTau2\|chr19 (47471366-47470865)
	447-924, gnl\|Hg17\|chr17 (78039080-78039903)
	447-924, gnl\|Mm7\|chr11 (121361725-121362172)