Non-Coding RNA Search

Ss1.1-rhyp15c_j21.5

Sequence:


               
               AGTAGAAAGGTAGACACTTCCATCTTTGTCCCTGGGAAGTCTCTCCCAAGACCCATGTGC
TATTTCCTGCCCTCCTGGGTCCTGCAGTGGTTGCCCTGTACCCTGAGCTTCATGAGTCTG
TAAAGGGAAGGAGGAGCAATTAGGATGTGGCAATGAGATCTGGGAGGGCAGAGTGCAGGC
TTAGCACCTAGTGTACCAGCCTAGCTGAGTCCTTACCCTGGGGCAGACAAGGAGGGCTGC
CCCTGGCTCTTCCCATATGACCCGCCTCAGGCTCAGTCCACAGTCCTCTCCATCCCAGAG
GGCCAGCTGCATGGCAGTGTCCCACAGTCTGATTTGGGGGGTTGCCCTTCTTGGGGGCAG
ATTTTCTGCTCTCTCAGTTCAACAAAATAGAAGGAACCCTCTCTATGTCAGTGACCCACT
TCCCCTTTTGTCAAGGCTTAGAGTGAGGCCTAAGTGCCTCTGAGCCCTGCTGAGTTGCTT
TTGCTGGAATCAAAGAGTGGAATAAAGCTCCCCAGTTTCCTGACGGAGGCTCCTGGCAAG
TGCCCTTTGTCAGACCCCACTATGGCCTGGGCAGGCAGCCACACTGGTCCTGGCCCTCAC
TTGGCACTCGGGGATAGTCCTGCCCTTCTCCCTGCATGCCTGTGGGTCTGCTCTGGTGTA
TGAAGGTCGGTGGGCCGTGTACCTGCTGAACCTGGCAAATAAATTTCATTCTGCCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAGAAAGGTAGACACTTCCATCTTTGTCCCTGGGAAGTCTCTCCCAAGACCCATGTGC
TATTTCCTGCCCTCCTGGGTCCTGCAGTGGTTGCCCTGTACCCTGAGCTTCATGAGTCTG
TAAAGGGAAGGAGGAGCAATTAGGATGTGGCAATGAGATCTGGGAGGGCAGAGTGCAGGC
TTAGCACCTAGTGTACCAGCCTAGCTGAGTCCTTACCCTGGGGCAGACAAGGAGGGCTGC
CCCTGGCTCTTCCCATATGACCCGCCTCAGGCTCAGTCCACAGTCCTCTCCATCCCAGAG
GGCCAGCTGCATGGCAGTGTCCCACAGTCTGATTTGGGGGGTTGCCCTTCTTGGGGGCAG
ATTTTCTGCTCTCTCAGTTCAACAAAATAGAAGGAACCCTCTCTATGTCAGTGACCCACT
TCCCCTTTTGTCAAGGCTTAGAGTGAGGCCTAAGTGCCTCTGAGCCCTGCTGAGTTGCTT
TTGCTGGAATCAAAGAGTGGAATAAAGCTCCCCAGTTTCCTGACGGAGGCTCCTGGCAAG
TGCCCTTTGTCAGACCCCACTATGGCCTGGGCAGGCAGCCACACTGGTCCTGGCCCTCAC
TTGGCACTCGGGGATAGTCCTGCCCTTCTCCCTGCATGCCTGTGGGTCTGCTCTGGTGTA
TGAAGGTCGGTGGGCCGTGTACCTGCTGAACCTGGCAAATAAATTTCATTCTGCCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               152-257, + strand, RNAz p=0.952583
               

               
               255-637, - strand, RNAz p=0.990169
               

               
               301-616, - strand, RNAz p=0.997205

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-257, + strand, RNAz p=0.952583
               

               
               255-637, - strand, RNAz p=0.990169
               

               
               301-616, - strand, RNAz p=0.997205

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_024046, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_024046, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               95-718, gnl|bosTau2|chr22 (38180564-38179934)
               

               
               95-718, gnl|canFam2|chr20 (42428949-42428565)
               

               
               95-718, gnl|echTel1|scaffold_322644 (49033-49452)
               

               
               95-718, gnl|hg17|chr3 (49870430-49870791)
               

               
               95-718, gnl|Hg17|chr3 (49871066-49870429)
               

               
               95-718, gnl|loxAfr1|scaffold_15371 (44420-44031)
               

               
               95-718, gnl|mm7|chr9 (107681339-107680987)
               

               
               95-718, gnl|Mm7|chr9 (107680690-107681338)
               

               
               95-718, gnl|monDom2|scaffold_5 (74841040-74840560)
               

               
               95-718, gnl|oryCun1|scaffold_191234 (74076-74440)
               

               
               95-718, gnl|panTro1|chr2 (51448222-51448583)
               

               
               95-718, gnl|rheMac2|chr2 (86549257-86548894)
               

               
               95-718, gnl|rn3|chr8 (113238948-113238613)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-718, gnl|bosTau2|chr22 (38180564-38179934)
               

               
               95-718, gnl|canFam2|chr20 (42428949-42428565)
               

               
               95-718, gnl|echTel1|scaffold_322644 (49033-49452)
               

               
               95-718, gnl|hg17|chr3 (49870430-49870791)
               

               
               95-718, gnl|Hg17|chr3 (49871066-49870429)
               

               
               95-718, gnl|loxAfr1|scaffold_15371 (44420-44031)
               

               
               95-718, gnl|mm7|chr9 (107681339-107680987)
               

               
               95-718, gnl|Mm7|chr9 (107680690-107681338)
               

               
               95-718, gnl|monDom2|scaffold_5 (74841040-74840560)
               

               
               95-718, gnl|oryCun1|scaffold_191234 (74076-74440)
               

               
               95-718, gnl|panTro1|chr2 (51448222-51448583)
               

               
               95-718, gnl|rheMac2|chr2 (86549257-86548894)
               

               
               95-718, gnl|rn3|chr8 (113238948-113238613)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ebs (0.354904)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.354904)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)

	152-257, + strand, RNAz p=0.952583
	255-637, - strand, RNAz p=0.990169
	301-616, - strand, RNAz p=0.997205

	95-718, gnl\|bosTau2\|chr22 (38180564-38179934)
	95-718, gnl\|canFam2\|chr20 (42428949-42428565)
	95-718, gnl\|echTel1\|scaffold_322644 (49033-49452)
	95-718, gnl\|hg17\|chr3 (49870430-49870791)
	95-718, gnl\|Hg17\|chr3 (49871066-49870429)
	95-718, gnl\|loxAfr1\|scaffold_15371 (44420-44031)
	95-718, gnl\|mm7\|chr9 (107681339-107680987)
	95-718, gnl\|Mm7\|chr9 (107680690-107681338)
	95-718, gnl\|monDom2\|scaffold_5 (74841040-74840560)
	95-718, gnl\|oryCun1\|scaffold_191234 (74076-74440)
	95-718, gnl\|panTro1\|chr2 (51448222-51448583)
	95-718, gnl\|rheMac2\|chr2 (86549257-86548894)
	95-718, gnl\|rn3\|chr8 (113238948-113238613)