Non-Coding RNA Search

Ss1.1-rhyp15c_n8.5

Sequence:


               
               CCCCATTCATCCCCATGTTTGTCTCATAATTTCTCCCCATCCCAGGAGGAGTTCTCAGGC
CTGGGGTGGGGCCCCGGGTGGGCGCGGGGTCGATTCAACCTGTGTGCTGCGAAGGACGCA
ACTTCCTCTTGAACAGTGTGCTGTTGTAAACATATTTGAAAACTATTATCAATAAAGTTT
TGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCATTCATCCCCATGTTTGTCTCATAATTTCTCCCCATCCCAGGAGGAGTTCTCAGGC
CTGGGGTGGGGCCCCGGGTGGGCGCGGGGTCGATTCAACCTGTGTGCTGCGAAGGACGCA
ACTTCCTCTTGAACAGTGTGCTGTTGTAAACATATTTGAAAACTATTATCAATAAAGTTT
TGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               36-155, + strand, RNAz p=0.671912

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-155, + strand, RNAz p=0.671912

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002730, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002730, +

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-193, gnl|bosTau2|chr7 (7702024-7702220)
               

               
               1-193, gnl|canFam2|chr20 (51427825-51428080)
               

               
               1-193, gnl|echTel1|scaffold_306135 (3496-3211)
               

               
               1-193, gnl|Hg17|chr19 (14063697-14063500)
               

               
               1-193, gnl|hg17|chr8 (85045552-85045818)
               

               
               1-193, gnl|loxAfr1|scaffold_76175 (10444-10138)
               

               
               1-193, gnl|mm7|chr8 (82574808-82575096)
               

               
               1-193, gnl|panTro1|chr7 (87176220-87176486)
               

               
               1-193, gnl|rheMac2|chr8 (86466315-86466584)
               

               
               1-193, gnl|rn3|chr19 (25845965-25845691)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-193, gnl|bosTau2|chr7 (7702024-7702220)
               

               
               1-193, gnl|canFam2|chr20 (51427825-51428080)
               

               
               1-193, gnl|echTel1|scaffold_306135 (3496-3211)
               

               
               1-193, gnl|Hg17|chr19 (14063697-14063500)
               

               
               1-193, gnl|hg17|chr8 (85045552-85045818)
               

               
               1-193, gnl|loxAfr1|scaffold_76175 (10444-10138)
               

               
               1-193, gnl|mm7|chr8 (82574808-82575096)
               

               
               1-193, gnl|panTro1|chr7 (87176220-87176486)
               

               
               1-193, gnl|rheMac2|chr8 (86466315-86466584)
               

               
               1-193, gnl|rn3|chr19 (25845965-25845691)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fce (0.271592)
               

               
               ese (0.253004)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

	1-193, gnl\|bosTau2\|chr7 (7702024-7702220)
	1-193, gnl\|canFam2\|chr20 (51427825-51428080)
	1-193, gnl\|echTel1\|scaffold_306135 (3496-3211)
	1-193, gnl\|Hg17\|chr19 (14063697-14063500)
	1-193, gnl\|hg17\|chr8 (85045552-85045818)
	1-193, gnl\|loxAfr1\|scaffold_76175 (10444-10138)
	1-193, gnl\|mm7\|chr8 (82574808-82575096)
	1-193, gnl\|panTro1\|chr7 (87176220-87176486)
	1-193, gnl\|rheMac2\|chr8 (86466315-86466584)
	1-193, gnl\|rn3\|chr19 (25845965-25845691)

	fce (0.271592)
	ese (0.253004)
	fbs (0.175346)
	hyp (0.142837)
	eep (0.122564)
	eru (0.120048)
	nbm (0.0993246)