Non-Coding RNA Search

Ss1.1-rhyp17c_a20.5

Sequence:


               
               ACTTTAAGATGTTGACTAATCCAGAAAGCCTGATGCATCATAACCTGGAAAACTGCTTTG
GTATATTTGTAGGAATCTGTAGAAATATCATATCCAGCCTCAAAGCATTAATCTCAAAAA
GCAACCAGAAAAAGCATCACCTTGAATGATCCAGTGATGGTTGTTGAATGTGTTCTCATT
AGATGCTTTGAAATAAGGCTTAAAATGATTTTTCTGGGCAATATAGACTTTCTTTGTTTT
TTGCTTAGAATGTCATAAATATATGTGAACATGTTTAATGCAGGGCTTTTTATCCTCTCC
AAAATGTCAACAGTATTTTCAGAATAAAGACTATGAAATATATTGCTGTTGTGGAAAATT
CTGGTCCTTTGTCTTTAATGTCTTTTTGAGTGGATAAAGGAAATTCATCTGGTTTGTAGT
TTCTATATTTCTGTGAATCTTTTGACCTTGCAATGAGTTGCAATAAAAGAGAAACAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTAAGATGTTGACTAATCCAGAAAGCCTGATGCATCATAACCTGGAAAACTGCTTTG
GTATATTTGTAGGAATCTGTAGAAATATCATATCCAGCCTCAAAGCATTAATCTCAAAAA
GCAACCAGAAAAAGCATCACCTTGAATGATCCAGTGATGGTTGTTGAATGTGTTCTCATT
AGATGCTTTGAAATAAGGCTTAAAATGATTTTTCTGGGCAATATAGACTTTCTTTGTTTT
TTGCTTAGAATGTCATAAATATATGTGAACATGTTTAATGCAGGGCTTTTTATCCTCTCC
AAAATGTCAACAGTATTTTCAGAATAAAGACTATGAAATATATTGCTGTTGTGGAAAATT
CTGGTCCTTTGTCTTTAATGTCTTTTTGAGTGGATAAAGGAAATTCATCTGGTTTGTAGT
TTCTATATTTCTGTGAATCTTTTGACCTTGCAATGAGTTGCAATAAAAGAGAAACAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-215, + strand, RNAz p=0.744712

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-215, + strand, RNAz p=0.744712

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-479, gnl|bosTau2|chr7 (66838303-66838779)
               

               
               2-479, gnl|Hg17|chr5 (107223131-107222635)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-479, gnl|bosTau2|chr7 (66838303-66838779)
               

               
               2-479, gnl|Hg17|chr5 (107223131-107222635)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               nms (0.213858)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               nms (0.213858)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)

	2-479, gnl\|bosTau2\|chr7 (66838303-66838779)
	2-479, gnl\|Hg17\|chr5 (107223131-107222635)