Non-Coding RNA Search

Ss1.1-rhyp17c_j17.5

Sequence:


               
               TGCAGGAGACCCACCCCTATCACATCCTGCTGTCTTGGGTCTCCCCACCCAACACAGTCT
CCACCAACCTCACCTGGTCCAGCGCCTCTGCCCTTCGGGGCCACGGGGCCACTGCTCTGG
CCCGCCTGCCACGGGGTACCCACAGCTACAACATCACCCGCCTCCTTCAGGCCACAGAGT
ACTGGGCCTGCCTGCAAGTGGCCTTTGCCGATGCCCACACCCAGCTGGCATGTGTATGGG
CCAGGACTAAAGAGGCCACTCCTTGTCACAGAGCCTTAGGGGACCGACCTGGGCTCATAG
CCGTCCTGGCTCTCGCCATCCTCCTGCTGGCAGCCGGGCTGGCGGCCCACCTTGGCACTG
GCCAGCCCAGGCAGGGAGTGTCTGGGAGACCTCTCCTTCCAGCCTGGGCTTTCTGGGGCT
GGAGTGCCTCCTCAGTTCGGGTGGTGTCAGCCCCACTGGTCCTGCACTGGAATCCAGGGA
GGAAGCCACCCAGGTCCTCATAGGAGGAGACACTGTCACCACCATTGTCACAAAACTCCT
GAAGCCCAGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGGAGACCCACCCCTATCACATCCTGCTGTCTTGGGTCTCCCCACCCAACACAGTCT
CCACCAACCTCACCTGGTCCAGCGCCTCTGCCCTTCGGGGCCACGGGGCCACTGCTCTGG
CCCGCCTGCCACGGGGTACCCACAGCTACAACATCACCCGCCTCCTTCAGGCCACAGAGT
ACTGGGCCTGCCTGCAAGTGGCCTTTGCCGATGCCCACACCCAGCTGGCATGTGTATGGG
CCAGGACTAAAGAGGCCACTCCTTGTCACAGAGCCTTAGGGGACCGACCTGGGCTCATAG
CCGTCCTGGCTCTCGCCATCCTCCTGCTGGCAGCCGGGCTGGCGGCCCACCTTGGCACTG
GCCAGCCCAGGCAGGGAGTGTCTGGGAGACCTCTCCTTCCAGCCTGGGCTTTCTGGGGCT
GGAGTGCCTCCTCAGTTCGGGTGGTGTCAGCCCCACTGGTCCTGCACTGGAATCCAGGGA
GGAAGCCACCCAGGTCCTCATAGGAGGAGACACTGTCACCACCATTGTCACAAAACTCCT
GAAGCCCAGCGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-518, - strand, RNAz p=0.953867

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-518, - strand, RNAz p=0.953867

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               182-279, + strand, RNAmicro p=0.997655
               

               
               178-285, - strand, RNAmicro p=0.924637

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               182-279, + strand, RNAmicro p=0.997655
               

               
               178-285, - strand, RNAmicro p=0.924637

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-550, gnl|bosTau2|chr16 (1801364-1801911)
               

               
               3-550, gnl|Hg17|chr1 (201319178-201318628)
               

               
               3-550, gnl|Mm7|chr1 (132839718-132840267)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-550, gnl|bosTau2|chr16 (1801364-1801911)
               

               
               3-550, gnl|Hg17|chr1 (201319178-201318628)
               

               
               3-550, gnl|Mm7|chr1 (132839718-132840267)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               eep (0.122564)

	182-279, + strand, RNAmicro p=0.997655
	178-285, - strand, RNAmicro p=0.924637

	3-550, gnl\|bosTau2\|chr16 (1801364-1801911)
	3-550, gnl\|Hg17\|chr1 (201319178-201318628)
	3-550, gnl\|Mm7\|chr1 (132839718-132840267)