Non-Coding RNA Search

Ss1.1-rhyp18c_c14.5

Sequence:


               
               TTTCACTCTATTGTAACCACAGGGGGGCCGTTGCATCCGGCCTGTCTGTGTCCTGCCCTG
GGCAGCTTGCCCGCCCGGGCACTCTCCCTCTGGTCTGGCCACCCACCAAAAGGGCACTTC
TCATGGTATTATTGGTAGAAGAGCTGCCAGCTTAAAAGCTCTTCATTTTCTTTGGCCAGG
GAGTGTATGGTTTGTTTTCTCAGTTGGGTTTTTTTTTAAAGGGATGGACATTTAATCTCT
GGATGGCGTTCACTTTCCGACCCCGGCGGGTGGGATGATGGCCTGACGTCTCTCCTCTTT
GTCCCCCCTTCTGCCTGCCCAGTGCCCTCCGCTTCTGCCCCCAGGCAGTGGGTGTCCAGT
TCCTCCCCCAAGTGCTTACTTGGAAAGAGCACGGCTGCCGGCCTCTTTTAGAAGAGCCCC
TTTGAGCCAGGAACCTGGCAGGGACAGAAGGGAGATGTCCGGGGAGGTTGACATTTGGGG
GAAAGGGGGGCTCAGGGAAGCGTGTCTTCTTCCTAGGCCTAAGGATCAAGGCCTTGGGGC
GGGTGGTGGGGGTGGGGGGTGTCTTCTGCTCAGTTTCCATCGTGGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCACTCTATTGTAACCACAGGGGGGCCGTTGCATCCGGCCTGTCTGTGTCCTGCCCTG
GGCAGCTTGCCCGCCCGGGCACTCTCCCTCTGGTCTGGCCACCCACCAAAAGGGCACTTC
TCATGGTATTATTGGTAGAAGAGCTGCCAGCTTAAAAGCTCTTCATTTTCTTTGGCCAGG
GAGTGTATGGTTTGTTTTCTCAGTTGGGTTTTTTTTTAAAGGGATGGACATTTAATCTCT
GGATGGCGTTCACTTTCCGACCCCGGCGGGTGGGATGATGGCCTGACGTCTCTCCTCTTT
GTCCCCCCTTCTGCCTGCCCAGTGCCCTCCGCTTCTGCCCCCAGGCAGTGGGTGTCCAGT
TCCTCCCCCAAGTGCTTACTTGGAAAGAGCACGGCTGCCGGCCTCTTTTAGAAGAGCCCC
TTTGAGCCAGGAACCTGGCAGGGACAGAAGGGAGATGTCCGGGGAGGTTGACATTTGGGG
GAAAGGGGGGCTCAGGGAAGCGTGTCTTCTTCCTAGGCCTAAGGATCAAGGCCTTGGGGC
GGGTGGTGGGGGTGGGGGGTGTCTTCTGCTCAGTTTCCATCGTGGAGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               318-511, + strand, RNAz p=0.601972
               

               
               324-443, - strand, RNAz p=0.791129

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               318-511, + strand, RNAz p=0.601972
               

               
               324-443, - strand, RNAz p=0.791129

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_003216, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003216, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               318-511, gnl|bosTau2|chr5 (71225207-71225400)
               

               
               318-511, gnl|canFam2|chr10 (26917204-26917054)
               

               
               318-511, gnl|dasNov1|scaffold_166969 (941-796)
               

               
               318-511, gnl|echTel1|scaffold_164708 (3481-3570)
               

               
               318-511, gnl|hg17|chr22 (40118513-40118661)
               

               
               318-511, gnl|Hg17|chr22 (40118512-40118722)
               

               
               318-511, gnl|loxAfr1|scaffold_73332 (6061-6205)
               

               
               318-511, gnl|mm7|chr15 (81910042-81910181)
               

               
               318-511, gnl|Mm7|chr15 (81909818-81910243)
               

               
               318-511, gnl|monDom2|scaffold_269 (48948-49073)
               

               
               318-511, gnl|panTro1|chr23 (40386854-40387002)
               

               
               318-511, gnl|rheMac2|chr10 (85354916-85355064)
               

               
               318-511, gnl|rn3|chr7 (120213006-120213145)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               318-511, gnl|bosTau2|chr5 (71225207-71225400)
               

               
               318-511, gnl|canFam2|chr10 (26917204-26917054)
               

               
               318-511, gnl|dasNov1|scaffold_166969 (941-796)
               

               
               318-511, gnl|echTel1|scaffold_164708 (3481-3570)
               

               
               318-511, gnl|hg17|chr22 (40118513-40118661)
               

               
               318-511, gnl|Hg17|chr22 (40118512-40118722)
               

               
               318-511, gnl|loxAfr1|scaffold_73332 (6061-6205)
               

               
               318-511, gnl|mm7|chr15 (81910042-81910181)
               

               
               318-511, gnl|Mm7|chr15 (81909818-81910243)
               

               
               318-511, gnl|monDom2|scaffold_269 (48948-49073)
               

               
               318-511, gnl|panTro1|chr23 (40386854-40387002)
               

               
               318-511, gnl|rheMac2|chr10 (85354916-85355064)
               

               
               318-511, gnl|rn3|chr7 (120213006-120213145)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	318-511, + strand, RNAz p=0.601972
	324-443, - strand, RNAz p=0.791129

	318-511, gnl\|bosTau2\|chr5 (71225207-71225400)
	318-511, gnl\|canFam2\|chr10 (26917204-26917054)
	318-511, gnl\|dasNov1\|scaffold_166969 (941-796)
	318-511, gnl\|echTel1\|scaffold_164708 (3481-3570)
	318-511, gnl\|hg17\|chr22 (40118513-40118661)
	318-511, gnl\|Hg17\|chr22 (40118512-40118722)
	318-511, gnl\|loxAfr1\|scaffold_73332 (6061-6205)
	318-511, gnl\|mm7\|chr15 (81910042-81910181)
	318-511, gnl\|Mm7\|chr15 (81909818-81910243)
	318-511, gnl\|monDom2\|scaffold_269 (48948-49073)
	318-511, gnl\|panTro1\|chr23 (40386854-40387002)
	318-511, gnl\|rheMac2\|chr10 (85354916-85355064)
	318-511, gnl\|rn3\|chr7 (120213006-120213145)