Non-Coding RNA Search

Ss1.1-rhyp18c_g13.5

Sequence:


               
               CTTGCGGGCCGCTGTGGCGTTTAAAGCGGAGGGCCAGCGCTGCTACCGAGAGAAGAAGTT
CCGGGAAGCCATCGGCAAGTATCATCGGGCACTGCTGCAGCTGAAGGCGGCGCAGGGGGC
CCGCCCTGGAGGCTTGCCCGCCTCCACCTCCGGGCCCGCCACCAGCCCGGGGCCGGCCCG
CCTCAGCGAGGAGCAGCGGCGCCTGGTGGAGAACACGGAGGTGGAATGTTATGACTCTCT
CACGGCCTGCCTGCTGCAGTCGGAGCTGGTGAACTATGAGCGGGTGCGTGAGTACTGTCT
CAAGGTGCTGGAGAAGCAGCAGGGCAACTTCAAGGCTACCTACCGCGCCGGCATTGCCTT
CTACCACCTGGGCGACTATGCACGCGCCTTGCGCTACCTGCAGGAGGCCCGCAGTCGCGA
GCCCACAGACACCAATGTCCTGCGCTACATCCAGCTGACTCAGCTGAAGATGAACCGTTG
CAGCCTCCAGCGTGAAGACAGTGGGTCTGGGGCCGGGTCTCGGGATGTCATTGGCTGAGA
CCAACCTGGGGGAACTGTCCCTATCCCCGCTCCCCCCACCTCATGGTGTAAGTTCCCCTG
ACTCATGTTTTCCCTGGTAAAGCATCTGTCACTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGCGGGCCGCTGTGGCGTTTAAAGCGGAGGGCCAGCGCTGCTACCGAGAGAAGAAGTT
CCGGGAAGCCATCGGCAAGTATCATCGGGCACTGCTGCAGCTGAAGGCGGCGCAGGGGGC
CCGCCCTGGAGGCTTGCCCGCCTCCACCTCCGGGCCCGCCACCAGCCCGGGGCCGGCCCG
CCTCAGCGAGGAGCAGCGGCGCCTGGTGGAGAACACGGAGGTGGAATGTTATGACTCTCT
CACGGCCTGCCTGCTGCAGTCGGAGCTGGTGAACTATGAGCGGGTGCGTGAGTACTGTCT
CAAGGTGCTGGAGAAGCAGCAGGGCAACTTCAAGGCTACCTACCGCGCCGGCATTGCCTT
CTACCACCTGGGCGACTATGCACGCGCCTTGCGCTACCTGCAGGAGGCCCGCAGTCGCGA
GCCCACAGACACCAATGTCCTGCGCTACATCCAGCTGACTCAGCTGAAGATGAACCGTTG
CAGCCTCCAGCGTGAAGACAGTGGGTCTGGGGCCGGGTCTCGGGATGTCATTGGCTGAGA
CCAACCTGGGGGAACTGTCCCTATCCCCGCTCCCCCCACCTCATGGTGTAAGTTCCCCTG
ACTCATGTTTTCCCTGGTAAAGCATCTGTCACTGGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|57038091|ref|XP_541617.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|57038091|ref|XP_541617.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               3-245, gnl|bosTau2|chr18 (41323766-41323524)
               

               
               3-245, gnl|Hg17|chr19 (45415944-45415702)
               

               
               3-245, gnl|Mm7|chr7 (24573408-24573650)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-245, gnl|bosTau2|chr18 (41323766-41323524)
               

               
               3-245, gnl|Hg17|chr19 (45415944-45415702)
               

               
               3-245, gnl|Mm7|chr7 (24573408-24573650)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               hyp (0.42851)
               

               
               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.42851)
               

               
               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	3-245, gnl\|bosTau2\|chr18 (41323766-41323524)
	3-245, gnl\|Hg17\|chr19 (45415944-45415702)
	3-245, gnl\|Mm7\|chr7 (24573408-24573650)

	hyp (0.42851)
	fhi (0.339155)
	fce (0.271592)
	fcc (0.197785)
	fbs (0.175346)
	ebs (0.118301)
	jca (0.11396)