Non-Coding RNA Search

Ss1.1-rhyp18c_h4.5

Sequence:


               
               TAGCTGCTCCCTATTGCCGGAGAAGGAGAGGAGTACCTCGGATCCTTTCAGGACTCTTGG
TCTTTTGGGAGCGACCCAAATCGAGTGAGGGAAGAGGGAGGAAACACCCCCCCGGATCCC
TGCAGGATTAATTTATTCAAAAAGGAGAATAGAAAAATACTCAATATGCAAAAGTCTTGT
GAAGAAAATGAAGGAAAATCACAGAACATGCCAAAGGCCGAGGAAGACCGCCCTTTGGAA
GATGTACCACAGGAGGCAGAAAGAAATCCTCAACCTTCTGAAGAAGGTGTAAGCCAGGAA
GCTGAAGGAAACCTTGGCACAGGGCTGACTCAGCCTAGCCAGGGATATAAAGAGGACACT
CCAGTTAGGCATTTGGACCCTGAAGAAATGATAAGAGGAGTAGATGAGTTGGAAAGGCTT
AGGGAAGAGATAAGAAGAGTAAGAAACAAGTTCGTGATGATGCATTGGAAGCAAAGACAT
TCACGCAGCCGCCCTTACCCTGTGTGCTTTAGGCCTTGAATTTTTTTTTTTTTTGGTCCG
ATATTAAAATCTGGCCCCTGCTTTCTTTCTGTTAGCGTTTTCTGATGTATCTTTGACTTT
CTTTTTATTCCTAATCATCTAGTGGAGTTTCGTTTTAGGTAGTTTCCCTGTTACCGGCAA
CTGGATTTTGTATTTTGACACATTTTCCAGGTCTGTTTTCCAATTGGGAAGTTTCACACA
TGTGCATGAAAATATTTTCATTCCATATTGTAAAGAAAAACATAACAGGTTACAGAGCAG
CATATTTAGTATCAGCTCACATATGTAGGGGAAATTCTCAAATTTGTGTGTGTGTGTGTG
TGTGTGTGTGCTAGCACGTGCGTGTGTGTGTGTGTGGGTGTGTATACACATGCATATATT
GAGAATTTGTGCTTATTTCTTGTGTGGTGTGAGTTTTCTTTTTGCTTATACGTATTTTTT
AATGAACACGTCACTCAAAAAGAATTAAAGTTTTTTTTTATATAATTAAGAGTCAATCAA
GTAATTGGCAACCAGCTTATAAGGGCAATGGGGGCACCTAAACTGATGAGAGAACTATTA
ACAAAAAATGTAAACCTCAAGTTTACCTCTGGATCTCTTAGCCAGGGGAATAAAACTGGC
AATTATTACCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGCTGCTCCCTATTGCCGGAGAAGGAGAGGAGTACCTCGGATCCTTTCAGGACTCTTGG
TCTTTTGGGAGCGACCCAAATCGAGTGAGGGAAGAGGGAGGAAACACCCCCCCGGATCCC
TGCAGGATTAATTTATTCAAAAAGGAGAATAGAAAAATACTCAATATGCAAAAGTCTTGT
GAAGAAAATGAAGGAAAATCACAGAACATGCCAAAGGCCGAGGAAGACCGCCCTTTGGAA
GATGTACCACAGGAGGCAGAAAGAAATCCTCAACCTTCTGAAGAAGGTGTAAGCCAGGAA
GCTGAAGGAAACCTTGGCACAGGGCTGACTCAGCCTAGCCAGGGATATAAAGAGGACACT
CCAGTTAGGCATTTGGACCCTGAAGAAATGATAAGAGGAGTAGATGAGTTGGAAAGGCTT
AGGGAAGAGATAAGAAGAGTAAGAAACAAGTTCGTGATGATGCATTGGAAGCAAAGACAT
TCACGCAGCCGCCCTTACCCTGTGTGCTTTAGGCCTTGAATTTTTTTTTTTTTTGGTCCG
ATATTAAAATCTGGCCCCTGCTTTCTTTCTGTTAGCGTTTTCTGATGTATCTTTGACTTT
CTTTTTATTCCTAATCATCTAGTGGAGTTTCGTTTTAGGTAGTTTCCCTGTTACCGGCAA
CTGGATTTTGTATTTTGACACATTTTCCAGGTCTGTTTTCCAATTGGGAAGTTTCACACA
TGTGCATGAAAATATTTTCATTCCATATTGTAAAGAAAAACATAACAGGTTACAGAGCAG
CATATTTAGTATCAGCTCACATATGTAGGGGAAATTCTCAAATTTGTGTGTGTGTGTGTG
TGTGTGTGTGCTAGCACGTGCGTGTGTGTGTGTGTGGGTGTGTATACACATGCATATATT
GAGAATTTGTGCTTATTTCTTGTGTGGTGTGAGTTTTCTTTTTGCTTATACGTATTTTTT
AATGAACACGTCACTCAAAAAGAATTAAAGTTTTTTTTTATATAATTAAGAGTCAATCAA
GTAATTGGCAACCAGCTTATAAGGGCAATGGGGGCACCTAAACTGATGAGAGAACTATTA
ACAAAAAATGTAAACCTCAAGTTTACCTCTGGATCTCTTAGCCAGGGGAATAAAACTGGC
AATTATTACCGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5EI33_GECJA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5EI33_GECJA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               52-399, + strand, RNAz p=0.998882
               

               
               1021-1135, - strand, RNAz p=0.781868

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               52-399, + strand, RNAz p=0.998882
               

               
               1021-1135, - strand, RNAz p=0.781868

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               52-745, gnl|bosTau2|chr18 (32897271-32896591)
               

               
               52-745, gnl|Hg17|chrX (102315896-102314461)
               

               
               52-745, gnl|Mm7|chrX (130890272-130889651)
               


               
               862-1149, gnl|bosTau2|chr18 (32894210-32893921)
               

               
               862-1149, gnl|Hg17|chrX (102314392-102314073)
               

               
               862-1149, gnl|Mm7|chrX (130889583-130889299)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-745, gnl|bosTau2|chr18 (32897271-32896591)
               

               
               52-745, gnl|Hg17|chrX (102315896-102314461)
               

               
               52-745, gnl|Mm7|chrX (130890272-130889651)
               


               
               862-1149, gnl|bosTau2|chr18 (32894210-32893921)
               

               
               862-1149, gnl|Hg17|chrX (102314392-102314073)
               

               
               862-1149, gnl|Mm7|chrX (130889583-130889299)

Expressed library(ies): 32 entry(ies)

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Expressed library(ies): 32 entry(ies)

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               aor (0.585823)
               

               
               fce (0.543183)
               

               
               nmm (0.531209)
               

               
               nje (0.49776)
               

               
               cbe (0.478469)
               

               
               spl (0.429553)
               

               
               amn (0.417711)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               nep (0.36785)
               

               
               isp (0.300752)
               

               
               ski (0.29347)
               

               
               csk (0.281492)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               jej (0.197844)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 32 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.585823)
               

               
               fce (0.543183)
               

               
               nmm (0.531209)
               

               
               nje (0.49776)
               

               
               cbe (0.478469)
               

               
               spl (0.429553)
               

               
               amn (0.417711)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               nep (0.36785)
               

               
               isp (0.300752)
               

               
               ski (0.29347)
               

               
               csk (0.281492)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               jej (0.197844)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	52-399, + strand, RNAz p=0.998882
	1021-1135, - strand, RNAz p=0.781868

	52-745, gnl\|bosTau2\|chr18 (32897271-32896591)
	52-745, gnl\|Hg17\|chrX (102315896-102314461)
	52-745, gnl\|Mm7\|chrX (130890272-130889651)

	862-1149, gnl\|bosTau2\|chr18 (32894210-32893921)
	862-1149, gnl\|Hg17\|chrX (102314392-102314073)
	862-1149, gnl\|Mm7\|chrX (130889583-130889299)

	aor (0.585823)
	fce (0.543183)
	nmm (0.531209)
	nje (0.49776)
	cbe (0.478469)
	spl (0.429553)
	amn (0.417711)
	fcc (0.39557)
	elu (0.385356)
	nep (0.36785)
	isp (0.300752)
	ski (0.29347)
	csk (0.281492)
	sug (0.254582)
	bla (0.248694)
	mgp (0.230681)
	ece (0.229305)
	jej (0.197844)
	mgm (0.180343)
	gul (0.177588)
	cut (0.169924)
	fhi (0.169578)
	nco (0.161734)
	hyp (0.142837)
	nca (0.136874)
	ssp (0.13552)
	ova (0.129132)
	cly (0.120642)
	med (0.116252)
	jca (0.11396)
	cty (0.10408)
	eje (0.0988338)