Non-Coding RNA Search

Ss1.1-rhyp18c_l4.5

Sequence:


               
               TGCTCCTCTTCCCCCTCCATCTATGCCGGCTTGCTGCTCTAGGCGCCATCAGCATTAAGC
CTGCCAGGTAGCACTCACCCCCACTCCCAGCAACTCTAACAGGACACTCAACCCAGGCGG
CAGCCTGAAGGGGTCTGGCCAGCAGCTTGAGTTAGAACTGAGAGGGAGCAAAGAAGTTGG
GGAGAGCAGGGAGACCTAATAAATCACCCTCCATCTCCTGAATCCCTGTTGTCATGGCAA
CTGTTGCCAGAGCCGGAGGTGTCTGGGGGTATCTGGGAACTGGGCCTTTGAGTTTCCTCA
GGCTGCTGGAGGAAAACAGAGACTCTGAGGCAGGAAGGGGAGGTCCCCACAGGCAAGGAG
GCCCTGGCCAGAGGCTTATTCTTCTAGACTGACCCTGACCAGTCTGAGGGTGGGTGGGGC
TATCCTGCCACCAGAATGCCTGGCCTGCCCAGATCACAGAGGGGGCTCCTGAGTGATGGT
TCAAGTGTCTCAGCCCCACTGAGCTGCCATGTGGGCATGCAGTGGGCACACGGGAGCTTG
GTTCTCAGCACTTGGGGGAACTACAGTGTAAGTGGAGAGGGAAGGGGTGCTGGGAGGGAG
TAGAGGGGGCCCGGCTCCTAGGCGGTGGGTACAGAGAGGTCAAGCCCAGGAGGACTCCCC
GCATACAGGCTGGAGGGGGGCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTCCTCTTCCCCCTCCATCTATGCCGGCTTGCTGCTCTAGGCGCCATCAGCATTAAGC
CTGCCAGGTAGCACTCACCCCCACTCCCAGCAACTCTAACAGGACACTCAACCCAGGCGG
CAGCCTGAAGGGGTCTGGCCAGCAGCTTGAGTTAGAACTGAGAGGGAGCAAAGAAGTTGG
GGAGAGCAGGGAGACCTAATAAATCACCCTCCATCTCCTGAATCCCTGTTGTCATGGCAA
CTGTTGCCAGAGCCGGAGGTGTCTGGGGGTATCTGGGAACTGGGCCTTTGAGTTTCCTCA
GGCTGCTGGAGGAAAACAGAGACTCTGAGGCAGGAAGGGGAGGTCCCCACAGGCAAGGAG
GCCCTGGCCAGAGGCTTATTCTTCTAGACTGACCCTGACCAGTCTGAGGGTGGGTGGGGC
TATCCTGCCACCAGAATGCCTGGCCTGCCCAGATCACAGAGGGGGCTCCTGAGTGATGGT
TCAAGTGTCTCAGCCCCACTGAGCTGCCATGTGGGCATGCAGTGGGCACACGGGAGCTTG
GTTCTCAGCACTTGGGGGAACTACAGTGTAAGTGGAGAGGGAAGGGGTGCTGGGAGGGAG
TAGAGGGGGCCCGGCTCCTAGGCGGTGGGTACAGAGAGGTCAAGCCCAGGAGGACTCCCC
GCATACAGGCTGGAGGGGGGCAGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               153-380, + strand, RNAz p=0.979258

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               153-380, + strand, RNAz p=0.979258

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               149-299, - strand, RNAmicro p=0.972424

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               149-299, - strand, RNAmicro p=0.972424

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of AK124465, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK124465, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-684, gnl|bosTau2|chr19 (37401808-37402507)
               

               
               1-684, gnl|Hg17|chr17 (40340123-40339272)
               

               
               1-684, gnl|Mm7|chr11 (102997619-102997034)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr19 (37401808-37402507)
               

               
               1-684, gnl|Hg17|chr17 (40340123-40339272)
               

               
               1-684, gnl|Mm7|chr11 (102997619-102997034)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               hyp (0.42851)
               

               
               fhi (0.169578)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.42851)
               

               
               fhi (0.169578)
               

               
               ebs (0.118301)

	1-684, gnl\|bosTau2\|chr19 (37401808-37402507)
	1-684, gnl\|Hg17\|chr17 (40340123-40339272)
	1-684, gnl\|Mm7\|chr11 (102997619-102997034)