Non-Coding RNA Search

Ss1.1-rhyp20c_g11.5

Sequence:


               
               AATTCCACCTGCTCCAGCGGCAGCTCCTCTCGACATGGACCCTGAGACCTGCCCCTGCCC
AGCCAATTCCACCTGCTCCAGCGGCAGCTCCTCTCGACATGGACCCTGAGACCTGCCCCT
GCCCTACTGGTGGCTCCTGCACCTGCGCTGGCTCCTGCAAGTGTGAGGGATGCAAATGCA
CCTCCTGCAAGAAGAGCTGCTGCTCCTGCTGCCCTGCTGAGTGTGAGAAATGCGCCAAGG
ATTGCGTGTGTAAAGGTGGAGAGGGGGCCGAAACTGAGGAAGAGAAGTGCAGCTGCTGCC
AGTGAGGACGTGCCCCTCCGTGGGAAATGTGTGTAAATAGTGCTGGGTGGCCTAGTGCCA
CCTGTCCCCATGGTGAGGCTCCGCAGTTGGTCCCCTTCCCCTGCTAGCCACTGGCAAGTG
ACAATAAATCCTGTGAAAGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCCACCTGCTCCAGCGGCAGCTCCTCTCGACATGGACCCTGAGACCTGCCCCTGCCC
AGCCAATTCCACCTGCTCCAGCGGCAGCTCCTCTCGACATGGACCCTGAGACCTGCCCCT
GCCCTACTGGTGGCTCCTGCACCTGCGCTGGCTCCTGCAAGTGTGAGGGATGCAAATGCA
CCTCCTGCAAGAAGAGCTGCTGCTCCTGCTGCCCTGCTGAGTGTGAGAAATGCGCCAAGG
ATTGCGTGTGTAAAGGTGGAGAGGGGGCCGAAACTGAGGAAGAGAAGTGCAGCTGCTGCC
AGTGAGGACGTGCCCCTCCGTGGGAAATGTGTGTAAATAGTGCTGGGTGGCCTAGTGCCA
CCTGTCCCCATGGTGAGGCTCCGCAGTTGGTCCCCTTCCCCTGCTAGCCACTGGCAAGTG
ACAATAAATCCTGTGAAAGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               MT3_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               MT3_PIG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               94-256, gnl|bosTau2|chr10 (21392991-21392831)
               

               
               94-256, gnl|Hg17|chr1 (16313204-16313045)
               

               
               94-256, gnl|Mm7|chr12 (5586917-5587077)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               94-256, gnl|bosTau2|chr10 (21392991-21392831)
               

               
               94-256, gnl|Hg17|chr1 (16313204-16313045)
               

               
               94-256, gnl|Mm7|chr12 (5586917-5587077)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               fhi (4.23944)
               

               
               fbs (2.98089)
               

               
               hyp (2.57106)
               

               
               fcc (2.37342)
               

               
               fce (0.814775)
               

               
               ebs (0.709807)
               

               
               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               hlv (0.139256)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (4.23944)
               

               
               fbs (2.98089)
               

               
               hyp (2.57106)
               

               
               fcc (2.37342)
               

               
               fce (0.814775)
               

               
               ebs (0.709807)
               

               
               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               hlv (0.139256)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	94-256, gnl\|bosTau2\|chr10 (21392991-21392831)
	94-256, gnl\|Hg17\|chr1 (16313204-16313045)
	94-256, gnl\|Mm7\|chr12 (5586917-5587077)

	fhi (4.23944)
	fbs (2.98089)
	hyp (2.57106)
	fcc (2.37342)
	fce (0.814775)
	ebs (0.709807)
	nmm (0.265604)
	cov (0.264306)
	ece (0.229305)
	fli (0.202881)
	hlv (0.139256)
	pgl (0.118483)
	spc (0.113366)