Non-Coding RNA Search

Ss1.1-rhyp20c_i21.5

Sequence:


               
               TCTTAGGGAAGGACTTTATTAAAAAAAGGAGAAGAAGAGTGTGCAGTAACTCCATTAAAC
TAATTTCCTGATCTTACCATTTCCAACCATATCCAGTGGCCAGTGTTAGGAACCCTTCGA
TAAACAAAGACAAGATGTCACAATTTTATGCCCACTTGCATTTTGGCAAATGACCAGAGA
TTGATATCCATGAGGTTGTGTCCCATCGCTTTCAGAAAATTTGACTTTTTAAGGTCTGTG
TATTTGCCTTATTCACAGAATAGGGCAACTGGAAGGATACGGAGAGCGGTCAAAAGGAGC
AGATCTGTTTCCTTATTTAATTCAGAGCTCTGTAGTGTGGTTGTGGCTCAGAAGCATGGC
ACCTGCCACTCTAATTTTGGAAGAACGAGTTATTTTGTAAAGTGTGTGTTAGTTAAATAA
AATTATGTCTTCAAAAGGACATTTCAGACCTTTCTGCTTAGATGATGGGGCATTAATTGC
TATACTATGTGATTATTTTATTGAATGAGTTATCATTAGCTTCTGCAATGATATATAACT
CTAAAATTGTGAACAGTGTGGAATAATAGCTTTATAATAAAAGCTACAGTTCCAGAACAT
TCTAGAAGGCTGTAATTCTGTGAATCTCATTAAAAACTAGATATATGATACCTAATTACA
TTGCAGCAACATATATAAATGATACTAGATATCATTTTTGGTATTAGGTAATGAGAAGGT
AAAGATTTCAGAAAAGTCTTGGACTTCCCTGGTGGCTCAGTGGGTTAAGACCCAGCATTG
TCACTGTTTGTCTCCGGTCACTGCTGTGGTGCAGGTTTGATCCCTGGCCCCAGGAACTTC
TGTATGCTGTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTAGGGAAGGACTTTATTAAAAAAAGGAGAAGAAGAGTGTGCAGTAACTCCATTAAAC
TAATTTCCTGATCTTACCATTTCCAACCATATCCAGTGGCCAGTGTTAGGAACCCTTCGA
TAAACAAAGACAAGATGTCACAATTTTATGCCCACTTGCATTTTGGCAAATGACCAGAGA
TTGATATCCATGAGGTTGTGTCCCATCGCTTTCAGAAAATTTGACTTTTTAAGGTCTGTG
TATTTGCCTTATTCACAGAATAGGGCAACTGGAAGGATACGGAGAGCGGTCAAAAGGAGC
AGATCTGTTTCCTTATTTAATTCAGAGCTCTGTAGTGTGGTTGTGGCTCAGAAGCATGGC
ACCTGCCACTCTAATTTTGGAAGAACGAGTTATTTTGTAAAGTGTGTGTTAGTTAAATAA
AATTATGTCTTCAAAAGGACATTTCAGACCTTTCTGCTTAGATGATGGGGCATTAATTGC
TATACTATGTGATTATTTTATTGAATGAGTTATCATTAGCTTCTGCAATGATATATAACT
CTAAAATTGTGAACAGTGTGGAATAATAGCTTTATAATAAAAGCTACAGTTCCAGAACAT
TCTAGAAGGCTGTAATTCTGTGAATCTCATTAAAAACTAGATATATGATACCTAATTACA
TTGCAGCAACATATATAAATGATACTAGATATCATTTTTGGTATTAGGTAATGAGAAGGT
AAAGATTTCAGAAAAGTCTTGGACTTCCCTGGTGGCTCAGTGGGTTAAGACCCAGCATTG
TCACTGTTTGTCTCCGGTCACTGCTGTGGTGCAGGTTTGATCCCTGGCCCCAGGAACTTC
TGTATGCTGTAG

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               91-665, gnl|bosTau2|chr1 (1246163-1245595)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-665, gnl|bosTau2|chr1 (1246163-1245595)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               col (0.195008)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	col (0.195008)
	cki (0.165235)
	lin (0.145603)
	hyp (0.142837)
	ssp (0.13552)
	spc (0.113366)
	ldo (0.0970026)