Ss1.1-rhyp20c_l12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTGTGGTGTTTCCATACCAGCCCAGCCGGGGCCGGTACCAGTTCAATTACTACGAGGCC AAGCAGGCGTGTGAGGAGCAGGACGGACGCCTGGCAACCTACTCCCAGCTGTACCAGGCG TGGACCGAGGGTCTGGACTGGTGTAACGCGGGCTGGCTGCTCGAGGGCTCCGTGCGCTAC CCAGTGCTCACGGCGCGCGCTCCGTGCGGTGGCCGAGGTCGGCCCGGCATCCGCAGCTAC GGGCCCCGCGACCGGAAGCGCGACCGCTACGACGCCTTCTGCTTCACCTCGGCGCTGACA GGCCACGTGTTCTTCGTGCCGGGGCGGCTGACGCTGTCTGAAGCCCATGCTGCGTGCCGG CGGCGCGGGGCCACCGTGGCCAAGGTCGGGCACCTCTATGCTGCCTGGAAGTTCTCTGGG CTGGACCAGTGCGACGGCGGCTGGCTGGCTGACGGCAGCGTGCGCTTCCCCATCACCACG CCGCGGCCGCGCTGCGGGGGCCTTCCGGATCCCGGAGTGCGCAGCTTTGGCTTCCCCAGA CCCCAGCAGGCGGCCTATGGGACCTACTGCTACTCCGAATAGGGGTTCACCGCACCCCCT CCAGCGTGCTCCACAAAGCCTGGGAATCGTGCCAGGGGTCTCTTGTCGCCCCTTCCCCGA GAGCATCCCCTTCCACCAGACGAAAAGCAACCCCTCTCGACCCGCCTTCCCGGGCTAGGG CTGCAGGCTACGGATCCCGGCTGGCCGGGGCGTCAGAGAGAGGAGTTGGTGGCGCCCCCG GTGGCGGTGCACGGCTATTACCCTAGGACCTGAGGCGGTTCGCGTGCCTCAGCCAACCGT GCAGCCCACGCTAGGTGGCGGAAGGAGAGTCGGGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTGTGGTGTTTCCATACCAGCCCAGCCGGGGCCGGTACCAGTTCAATTACTACGAGGCC AAGCAGGCGTGTGAGGAGCAGGACGGACGCCTGGCAACCTACTCCCAGCTGTACCAGGCG TGGACCGAGGGTCTGGACTGGTGTAACGCGGGCTGGCTGCTCGAGGGCTCCGTGCGCTAC CCAGTGCTCACGGCGCGCGCTCCGTGCGGTGGCCGAGGTCGGCCCGGCATCCGCAGCTAC GGGCCCCGCGACCGGAAGCGCGACCGCTACGACGCCTTCTGCTTCACCTCGGCGCTGACA GGCCACGTGTTCTTCGTGCCGGGGCGGCTGACGCTGTCTGAAGCCCATGCTGCGTGCCGG CGGCGCGGGGCCACCGTGGCCAAGGTCGGGCACCTCTATGCTGCCTGGAAGTTCTCTGGG CTGGACCAGTGCGACGGCGGCTGGCTGGCTGACGGCAGCGTGCGCTTCCCCATCACCACG CCGCGGCCGCGCTGCGGGGGCCTTCCGGATCCCGGAGTGCGCAGCTTTGGCTTCCCCAGA CCCCAGCAGGCGGCCTATGGGACCTACTGCTACTCCGAATAGGGGTTCACCGCACCCCCT CCAGCGTGCTCCACAAAGCCTGGGAATCGTGCCAGGGGTCTCTTGTCGCCCCTTCCCCGA GAGCATCCCCTTCCACCAGACGAAAAGCAACCCCTCTCGACCCGCCTTCCCGGGCTAGGG CTGCAGGCTACGGATCCCGGCTGGCCGGGGCGTCAGAGAGAGGAGTTGGTGGCGCCCCCG GTGGCGGTGCACGGCTATTACCCTAGGACCTGAGGCGGTTCGCGTGCCTCAGCCAACCGT GCAGCCCACGCTAGGTGGCGGAAGGAGAGTCGGGTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-285, gnl|bosTau2|chr21 (14832460-14832747) | |
| 1-285, gnl|canFam2|chr3 (54897280-54897479) | |
| 1-285, gnl|danRer3|chr25 (11789449-11789256) | |
| 1-285, gnl|dasNov1|scaffold_15075 (23519-23717) | |
| 1-285, gnl|echTel1|scaffold_239608 (2637-2438) | |
| 1-285, gnl|fr1|chrUn (111151296-111151495) | |
| 1-285, gnl|galGal2|chrUn (121739321-121739128) | |
| 1-285, gnl|hg17|chr15 (87223193-87223392) | |
| 1-285, gnl|Hg17|chr15 (87223505-87223218) | |
| 1-285, gnl|loxAfr1|scaffold_6467 (62869-63064) | |
| 1-285, gnl|mm7|chr7 (74981042-74981241) | |
| 1-285, gnl|Mm7|chr7 (74981354-74981067) | |
| 1-285, gnl|monDom2|scaffold_45 (11630104-11629906) | |
| 1-285, gnl|oryCun1|scaffold_87313 (2233-2039) | |
| 1-285, gnl|panTro1|chr16 (88078093-88078292) | |
| 1-285, gnl|rheMac2|chr7 (68489565-68489764) | |
| 1-285, gnl|rn3|chr1 (134931336-134931535) | |
| 1-285, gnl|tetNig1|chrUn_random (25859233-25859040) | |
| 1-285, gnl|xenTro1|scaffold_130 (1543545-1543350) | |
| 299-851, gnl|bosTau2|chr3 (10967349-10967894) | |
| 299-851, gnl|Hg17|chr1 (153407963-153408508) | |
| 327-573, gnl|bosTau2|chr21 (14833441-14833684) | |
| 327-573, gnl|canFam2|chr3 (54896173-54896353) | |
| 327-573, gnl|danRer3|chr25 (11790307-11790132) | |
| 327-573, gnl|dasNov1|scaffold_15075 (22896-23076) | |
| 327-573, gnl|echTel1|scaffold_239608 (3878-3698) | |
| 327-573, gnl|fr1|chrUn (111150850-111151027) | |
| 327-573, gnl|galGal2|chrUn (121739669-121739490) | |
| 327-573, gnl|hg17|chr15 (87222216-87222396) | |
| 327-573, gnl|Hg17|chr15 (87222460-87222217) | |
| 327-573, gnl|loxAfr1|scaffold_6467 (61641-61821) | |
| 327-573, gnl|mm7|chr7 (74980423-74980600) | |
| 327-573, gnl|Mm7|chr7 (74980664-74980424) | |
| 327-573, gnl|monDom2|scaffold_45 (11631783-11631603) | |
| 327-573, gnl|oryCun1|scaffold_87313 (4704-4524) | |
| 327-573, gnl|panTro1|chr16 (88077116-88077296) | |
| 327-573, gnl|rheMac2|chr7 (68488584-68488764) | |
| 327-573, gnl|rn3|chr1 (134930377-134930554) | |
| 327-573, gnl|tetNig1|chrUn_random (25859654-25859477) | |
| 327-573, gnl|xenTro1|scaffold_130 (1545213-1545038) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-285, gnl|bosTau2|chr21 (14832460-14832747) | |
| 1-285, gnl|canFam2|chr3 (54897280-54897479) | |
| 1-285, gnl|danRer3|chr25 (11789449-11789256) | |
| 1-285, gnl|dasNov1|scaffold_15075 (23519-23717) | |
| 1-285, gnl|echTel1|scaffold_239608 (2637-2438) | |
| 1-285, gnl|fr1|chrUn (111151296-111151495) | |
| 1-285, gnl|galGal2|chrUn (121739321-121739128) | |
| 1-285, gnl|hg17|chr15 (87223193-87223392) | |
| 1-285, gnl|Hg17|chr15 (87223505-87223218) | |
| 1-285, gnl|loxAfr1|scaffold_6467 (62869-63064) | |
| 1-285, gnl|mm7|chr7 (74981042-74981241) | |
| 1-285, gnl|Mm7|chr7 (74981354-74981067) | |
| 1-285, gnl|monDom2|scaffold_45 (11630104-11629906) | |
| 1-285, gnl|oryCun1|scaffold_87313 (2233-2039) | |
| 1-285, gnl|panTro1|chr16 (88078093-88078292) | |
| 1-285, gnl|rheMac2|chr7 (68489565-68489764) | |
| 1-285, gnl|rn3|chr1 (134931336-134931535) | |
| 1-285, gnl|tetNig1|chrUn_random (25859233-25859040) | |
| 1-285, gnl|xenTro1|scaffold_130 (1543545-1543350) | |
| 299-851, gnl|bosTau2|chr3 (10967349-10967894) | |
| 299-851, gnl|Hg17|chr1 (153407963-153408508) | |
| 327-573, gnl|bosTau2|chr21 (14833441-14833684) | |
| 327-573, gnl|canFam2|chr3 (54896173-54896353) | |
| 327-573, gnl|danRer3|chr25 (11790307-11790132) | |
| 327-573, gnl|dasNov1|scaffold_15075 (22896-23076) | |
| 327-573, gnl|echTel1|scaffold_239608 (3878-3698) | |
| 327-573, gnl|fr1|chrUn (111150850-111151027) | |
| 327-573, gnl|galGal2|chrUn (121739669-121739490) | |
| 327-573, gnl|hg17|chr15 (87222216-87222396) | |
| 327-573, gnl|Hg17|chr15 (87222460-87222217) | |
| 327-573, gnl|loxAfr1|scaffold_6467 (61641-61821) | |
| 327-573, gnl|mm7|chr7 (74980423-74980600) | |
| 327-573, gnl|Mm7|chr7 (74980664-74980424) | |
| 327-573, gnl|monDom2|scaffold_45 (11631783-11631603) | |
| 327-573, gnl|oryCun1|scaffold_87313 (4704-4524) | |
| 327-573, gnl|panTro1|chr16 (88077116-88077296) | |
| 327-573, gnl|rheMac2|chr7 (68488584-68488764) | |
| 327-573, gnl|rn3|chr1 (134930377-134930554) | |
| 327-573, gnl|tetNig1|chrUn_random (25859654-25859477) | |
| 327-573, gnl|xenTro1|scaffold_130 (1545213-1545038) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.350693) | |
| hyp (0.285673) |