Non-Coding RNA Search

Ss1.1-rhyp20c_m20.5

Sequence:


               
               ATATTTGTTTTTTTGTAAAAACACGTATTCTCCATATCTTCTACCTTTCGCTTCCATTTC
CTTAAGCAGAAACTACTTATGGGCATAGCCTCATCATGTTTTATTAAATGATAAGCTACT
GCAGTTGCTAGAACTTTCTGACAGCCTTTCATTTTCAGAGGGTTAACTTTTATTGCATGG
CATAGATTGTTAATACCATTCTGCATTTTACACTTTTTCCAAAAGTGTTGGACAACTCAG
GATTATAATCTGTATAAGCTTGAGGTAAAACAAATCAGGTAGTTTCAGAGGGAGTTATTT
GAAATTTCCTAGTTCTTATCCTTTACAATAGATCAGATTTTTTACATATTATAATAATAG
CAGATCAAATTAAAGTTTACTGTCTCCCTAGTATATATACATTTGCAAATGCAGTGGAGG
AAAAGACACTATGGACAGTAGTTTTATGGTGCCTTTCTCTGCTGTGCCAAAGCTGTCTGT
CAACAATGAAATGTTAACCCTATGCTACTTTTTTCTGCATGTTTCTTCTCTCAAATGTCA
TATCTCAATGCTTACTTGTCCTAACTTGTAATATTTTGGTATTAAATTTTTTAGGAGTTC
CTTGTAATTTCTTTATAAATTGAAATATATTAAACACAAAGTGTTTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATTTGTTTTTTTGTAAAAACACGTATTCTCCATATCTTCTACCTTTCGCTTCCATTTC
CTTAAGCAGAAACTACTTATGGGCATAGCCTCATCATGTTTTATTAAATGATAAGCTACT
GCAGTTGCTAGAACTTTCTGACAGCCTTTCATTTTCAGAGGGTTAACTTTTATTGCATGG
CATAGATTGTTAATACCATTCTGCATTTTACACTTTTTCCAAAAGTGTTGGACAACTCAG
GATTATAATCTGTATAAGCTTGAGGTAAAACAAATCAGGTAGTTTCAGAGGGAGTTATTT
GAAATTTCCTAGTTCTTATCCTTTACAATAGATCAGATTTTTTACATATTATAATAATAG
CAGATCAAATTAAAGTTTACTGTCTCCCTAGTATATATACATTTGCAAATGCAGTGGAGG
AAAAGACACTATGGACAGTAGTTTTATGGTGCCTTTCTCTGCTGTGCCAAAGCTGTCTGT
CAACAATGAAATGTTAACCCTATGCTACTTTTTTCTGCATGTTTCTTCTCTCAAATGTCA
TATCTCAATGCTTACTTGTCCTAACTTGTAATATTTTGGTATTAAATTTTTTAGGAGTTC
CTTGTAATTTCTTTATAAATTGAAATATATTAAACACAAAGTGTTTAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               376-491, + strand, RNAz p=0.991367

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               376-491, + strand, RNAz p=0.991367

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               429-486, + strand, RNAmicro p=0.99937

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               429-486, + strand, RNAmicro p=0.99937

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               74-648, gnl|bosTau2|chr1 (60318902-60318325)
               

               
               74-648, gnl|Hg17|chr3 (178220419-178219854)
               

               
               74-648, gnl|Mm7|chr3 (21955285-21955843)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-648, gnl|bosTau2|chr1 (60318902-60318325)
               

               
               74-648, gnl|Hg17|chr3 (178220419-178219854)
               

               
               74-648, gnl|Mm7|chr3 (21955285-21955843)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hea (0.204499)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               hyp (0.142837)

	74-648, gnl\|bosTau2\|chr1 (60318902-60318325)
	74-648, gnl\|Hg17\|chr3 (178220419-178219854)
	74-648, gnl\|Mm7\|chr3 (21955285-21955843)