Non-Coding RNA Search

Ss1.1-rhyp20c_m22.5

Sequence:


               
               ACAGCACTGTGACTTCCTACAGCTCCGTGCAGTACCCGCTGAGCACACGGCTGCCCCTGC
CCTTTGGGGAGTCGGACCTCGACTTCTTGACCCCTCCTGCCTACAGCCCGCACGCCCCCG
ACCTGCCACCCTCCTACGATGAGGCCATCAGGATGGCCAAGACCAGACAGGAAGAGCCAG
CCCCCTCCCTGGGGCCTCATGCCTAGAGACTCCTGCAGGCCCCAGGAACTGGACCATGGT
GCCTGGCAACCCTGGCTGTAGCCCTGGTGCCCCCCGGAGGGGGCGGGAAAGCCCCCTGAG
CCTCCCCCTGCCACCAGCCTCTGTGCTCACAGGGGACTGTGCCAGGGCTCTTGGAGCTGG
GGACCCCCAACCCACCCCCACCATCCTTCCCCCAGGAAGGCCACCATCCAGCACAGTGCT
GCAGCCCTGGCCTCGTTGCTGTGTGACGCTGGGCAGCCGAGCCAGCCAGCCCTGTGTTGG
CCACACGCGCGCGCGCACAGGCTGCTACGCTCAGCCCTGGCCCCCGGCCCAGCCTCAGCC
CAGAGAAGGCCCCACAGGGCTAAGGGTCTGCTGTGACGTCCGCTGCTTTTTGGGGAGAGA
ATAAAGTTGGTACCTAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGCACTGTGACTTCCTACAGCTCCGTGCAGTACCCGCTGAGCACACGGCTGCCCCTGC
CCTTTGGGGAGTCGGACCTCGACTTCTTGACCCCTCCTGCCTACAGCCCGCACGCCCCCG
ACCTGCCACCCTCCTACGATGAGGCCATCAGGATGGCCAAGACCAGACAGGAAGAGCCAG
CCCCCTCCCTGGGGCCTCATGCCTAGAGACTCCTGCAGGCCCCAGGAACTGGACCATGGT
GCCTGGCAACCCTGGCTGTAGCCCTGGTGCCCCCCGGAGGGGGCGGGAAAGCCCCCTGAG
CCTCCCCCTGCCACCAGCCTCTGTGCTCACAGGGGACTGTGCCAGGGCTCTTGGAGCTGG
GGACCCCCAACCCACCCCCACCATCCTTCCCCCAGGAAGGCCACCATCCAGCACAGTGCT
GCAGCCCTGGCCTCGTTGCTGTGTGACGCTGGGCAGCCGAGCCAGCCAGCCCTGTGTTGG
CCACACGCGCGCGCGCACAGGCTGCTACGCTCAGCCCTGGCCCCCGGCCCAGCCTCAGCC
CAGAGAAGGCCCCACAGGGCTAAGGGTCTGCTGTGACGTCCGCTGCTTTTTGGGGAGAGA
ATAAAGTTGGTACCTAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               135-432, - strand, RNAz p=0.999659
               

               
               503-593, - strand, RNAz p=0.665881

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               135-432, - strand, RNAz p=0.999659
               

               
               503-593, - strand, RNAz p=0.665881

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               566-669, - strand, RNAmicro p=0.986346
               

               
               568-634, + strand, RNAmicro p=0.944004
               

               
               191-294, - strand, RNAmicro p=0.939467

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               566-669, - strand, RNAmicro p=0.986346
               

               
               568-634, + strand, RNAmicro p=0.944004
               

               
               191-294, - strand, RNAmicro p=0.939467

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               16-616, gnl|bosTau2|chr16 (37520238-37520876)
               

               
               16-616, gnl|Hg17|chr1 (1881763-1881197)
               

               
               16-616, gnl|Mm7|chr4 (154459813-154460394)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-616, gnl|bosTau2|chr16 (37520238-37520876)
               

               
               16-616, gnl|Hg17|chr1 (1881763-1881197)
               

               
               16-616, gnl|Mm7|chr4 (154459813-154460394)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               hyp (0.42851)
               

               
               mas (0.210305)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               cov (0.132153)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.42851)
               

               
               mas (0.210305)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               cov (0.132153)

	135-432, - strand, RNAz p=0.999659
	503-593, - strand, RNAz p=0.665881

	566-669, - strand, RNAmicro p=0.986346
	568-634, + strand, RNAmicro p=0.944004
	191-294, - strand, RNAmicro p=0.939467

	16-616, gnl\|bosTau2\|chr16 (37520238-37520876)
	16-616, gnl\|Hg17\|chr1 (1881763-1881197)
	16-616, gnl\|Mm7\|chr4 (154459813-154460394)

	hyp (0.42851)
	mas (0.210305)
	ton (0.1755)
	nco (0.161734)
	cov (0.132153)