Non-Coding RNA Search

Ss1.1-rhyp20c_o3.5

Sequence:


               
               CTCAGGGCAGTCCCACATCGACTGGGCCAGCACAAGCAGGCAGTGACTTGGTCCTTGAAA
TAATTCCTTGCGAGGCTGGCCTGGGGAAGCTGTTGTGGGTAGGTAGGTTTTATTGTTTAC
TAGGTAACCCGCTGGCCCTCTGCCTCATCCTTTCATCCATGTGCCAACATTGAATCCTCC
TGCCGACCGACTTCCAATCAGAAGTCTCACTGGTGGGGTGGGGAAGGAGGCAGGGATGGG
AGCCTGAAGCACCTGAGCAGGTAGCAAGGTCAACAGGTCAGCTCCTTCGCACGCTGCCTC
GGTTAAGACCAAAGTCAAGCTTGTGAGCTTGCTGTAAACACGCCACAGATACCGTTCCCT
TTCTGGTGTGTCCCTCAAGCCTTCTCACCGGATCGACACACGCAGGATGCTCTTGTGAAA
ACTCCAGGGTAACAGCAAGTGACAGCTACTGCACTATTTGCTGCGTAACCCCCCTCTTTG
ACATTGTCCTTCTCATATGAAGCAGAAAGGACTTCTGTACCCCAAACCCTGAGATATCTT
AGCTAGACTGCCTCCCGATAAGCCAGAGCCTGTGGTCCAAAGCCTGCTCCTATCTGAGTT
ACCACCGCGTGGCCCCAGGAGGCTGGAGGGCAAGAGCGCAAGACAGCCCTGGCCGAAACC
TGTCCTTGGACGGACTTCTTCACCTGCCATTTGCAAAGAGGATACTCTGGTGCCAACACT
AAATGTCCCTTAACAAGGATGGGGTTTAGAACCCGCTACCATGAAGTTTTTCCCCAAGAG
GTAGTTAAAAAACTAGGTTTTTAAAAGTGCCTTTTACTTAATCCATTGTTGTTCGTGAAC
TTTTAAAGTACTGAATGTGTAACAGTGTCTTCGATTTTGACTATTTCAGTCTTTAATGGG
TGCCATTTAAAAATCATAAAATGCTGTAATTTTTTTTACTGTTTTGTTTACCATCAGTGT
ATCCTGATAAATCACTCCTGTGGTGATTAAATTGCACTAATATTTTCCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGGGCAGTCCCACATCGACTGGGCCAGCACAAGCAGGCAGTGACTTGGTCCTTGAAA
TAATTCCTTGCGAGGCTGGCCTGGGGAAGCTGTTGTGGGTAGGTAGGTTTTATTGTTTAC
TAGGTAACCCGCTGGCCCTCTGCCTCATCCTTTCATCCATGTGCCAACATTGAATCCTCC
TGCCGACCGACTTCCAATCAGAAGTCTCACTGGTGGGGTGGGGAAGGAGGCAGGGATGGG
AGCCTGAAGCACCTGAGCAGGTAGCAAGGTCAACAGGTCAGCTCCTTCGCACGCTGCCTC
GGTTAAGACCAAAGTCAAGCTTGTGAGCTTGCTGTAAACACGCCACAGATACCGTTCCCT
TTCTGGTGTGTCCCTCAAGCCTTCTCACCGGATCGACACACGCAGGATGCTCTTGTGAAA
ACTCCAGGGTAACAGCAAGTGACAGCTACTGCACTATTTGCTGCGTAACCCCCCTCTTTG
ACATTGTCCTTCTCATATGAAGCAGAAAGGACTTCTGTACCCCAAACCCTGAGATATCTT
AGCTAGACTGCCTCCCGATAAGCCAGAGCCTGTGGTCCAAAGCCTGCTCCTATCTGAGTT
ACCACCGCGTGGCCCCAGGAGGCTGGAGGGCAAGAGCGCAAGACAGCCCTGGCCGAAACC
TGTCCTTGGACGGACTTCTTCACCTGCCATTTGCAAAGAGGATACTCTGGTGCCAACACT
AAATGTCCCTTAACAAGGATGGGGTTTAGAACCCGCTACCATGAAGTTTTTCCCCAAGAG
GTAGTTAAAAAACTAGGTTTTTAAAAGTGCCTTTTACTTAATCCATTGTTGTTCGTGAAC
TTTTAAAGTACTGAATGTGTAACAGTGTCTTCGATTTTGACTATTTCAGTCTTTAATGGG
TGCCATTTAAAAATCATAAAATGCTGTAATTTTTTTTACTGTTTTGTTTACCATCAGTGT
ATCCTGATAAATCACTCCTGTGGTGATTAAATTGCACTAATATTTTCCAAAAAAAAAAAA

Predicted RNA structure(s): 5 entry(ies)

More info

Predicted RNA structure(s): 5 entry(ies)

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               20-122, - strand, RNAz p=0.844792
               

               
               255-351, - strand, RNAz p=0.650211
               

               
               685-791, - strand, RNAz p=0.913616
               

               
               704-812, - strand, RNAz p=0.939403
               

               
               892-1010, + strand, RNAz p=0.9816

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               20-122, - strand, RNAz p=0.844792
               

               
               255-351, - strand, RNAz p=0.650211
               

               
               685-791, - strand, RNAz p=0.913616
               

               
               704-812, - strand, RNAz p=0.939403
               

               
               892-1010, + strand, RNAz p=0.9816

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-1010, gnl|bosTau2|chr19 (16553267-16552267)
               

               
               1-1010, gnl|canFam2|chr9 (48373451-48372415)
               

               
               1-1010, gnl|dasNov1|scaffold_28696 (11574-10565)
               

               
               1-1010, gnl|echTel1|scaffold_202169 (2658-3672)
               

               
               1-1010, gnl|hg17|chr17 (591664-592730)
               

               
               1-1010, gnl|Hg17|chr17 (591941-592958)
               

               
               1-1010, gnl|loxAfr1|scaffold_20973 (30875-31969)
               

               
               1-1010, gnl|mm7|chr11 (76289846-76290767)
               

               
               1-1010, gnl|Mm7|chr11 (76290062-76290983)
               

               
               1-1010, gnl|monDom2|scaffold_86 (1762332-1761295)
               

               
               1-1010, gnl|oryCun1|scaffold_179706 (170241-171224)
               

               
               1-1010, gnl|panTro1|chr19 (719920-720983)
               

               
               1-1010, gnl|rheMac2|chr16 (533275-534304)
               

               
               1-1010, gnl|rn3|chr10 (63575571-63576536)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1010, gnl|bosTau2|chr19 (16553267-16552267)
               

               
               1-1010, gnl|canFam2|chr9 (48373451-48372415)
               

               
               1-1010, gnl|dasNov1|scaffold_28696 (11574-10565)
               

               
               1-1010, gnl|echTel1|scaffold_202169 (2658-3672)
               

               
               1-1010, gnl|hg17|chr17 (591664-592730)
               

               
               1-1010, gnl|Hg17|chr17 (591941-592958)
               

               
               1-1010, gnl|loxAfr1|scaffold_20973 (30875-31969)
               

               
               1-1010, gnl|mm7|chr11 (76289846-76290767)
               

               
               1-1010, gnl|Mm7|chr11 (76290062-76290983)
               

               
               1-1010, gnl|monDom2|scaffold_86 (1762332-1761295)
               

               
               1-1010, gnl|oryCun1|scaffold_179706 (170241-171224)
               

               
               1-1010, gnl|panTro1|chr19 (719920-720983)
               

               
               1-1010, gnl|rheMac2|chr16 (533275-534304)
               

               
               1-1010, gnl|rn3|chr10 (63575571-63576536)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               cte (0.29274)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               eru (0.120048)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               eru (0.120048)

	20-122, - strand, RNAz p=0.844792
	255-351, - strand, RNAz p=0.650211
	685-791, - strand, RNAz p=0.913616
	704-812, - strand, RNAz p=0.939403
	892-1010, + strand, RNAz p=0.9816

	1-1010, gnl\|bosTau2\|chr19 (16553267-16552267)
	1-1010, gnl\|canFam2\|chr9 (48373451-48372415)
	1-1010, gnl\|dasNov1\|scaffold_28696 (11574-10565)
	1-1010, gnl\|echTel1\|scaffold_202169 (2658-3672)
	1-1010, gnl\|hg17\|chr17 (591664-592730)
	1-1010, gnl\|Hg17\|chr17 (591941-592958)
	1-1010, gnl\|loxAfr1\|scaffold_20973 (30875-31969)
	1-1010, gnl\|mm7\|chr11 (76289846-76290767)
	1-1010, gnl\|Mm7\|chr11 (76290062-76290983)
	1-1010, gnl\|monDom2\|scaffold_86 (1762332-1761295)
	1-1010, gnl\|oryCun1\|scaffold_179706 (170241-171224)
	1-1010, gnl\|panTro1\|chr19 (719920-720983)
	1-1010, gnl\|rheMac2\|chr16 (533275-534304)
	1-1010, gnl\|rn3\|chr10 (63575571-63576536)

	cte (0.29274)
	ton (0.1755)
	hyp (0.142837)
	pla (0.133672)
	eru (0.120048)