Non-Coding RNA Search

Ss1.1-rhyp20c_p19.5

Sequence:


               
               ATGGTCCACCCAGATGATTCGGGATGCCACACCTCAAGATCCTTAACTACATCTCCAAAG
GCCCCTTTTCCCAATAAGCTTACATATGCGACTGCCAGGGATTTGACCTGGCTCTAGATC
TTTGGGGGGCCACCGTTCAACCCGCTTCAGGCCTCAGTTACCTTCTCTGTAAAATGGGGA
TGGTCATAATAGCACCTGCTTTGCAGGCTGATGAGGGTTCAATGAGTTAGCATAGCTCCT
GGGATGTATTACATATGACTAGTGCTATTCCTAAACTAAAGAGGGAAAGAGCCACCCCTT
GCAAAGGCTAGAGTGGGTGGGGGAACAGGACATGTCCCTGACTGGTGCCCGGGGAACATG
TGCCTCAGGCAGCTGCCAACAACCTCTCCTCCCTCACCTCCCACAGACAACGGCCCCGTG
GGCAAGCGGCGCACAGGCACAGCCACCGTGTTTGTCACCGTCCTGGATGTGAATGACAAC
CGGCCCATTTTTCTGCAGAGCAGCTACGAGGCCAGTGTCCCCGAGGACATCCCTGAGGGC
CACAGCATCGTGCAGGCAAGTGGCCTGCCAGGGGCAGGCACAGGGCAGCACATGCCCAGG
GGCAACGCGGCAGGACGGGATAGAAGCAGGAGAGGGTCCAGCTGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGTCCACCCAGATGATTCGGGATGCCACACCTCAAGATCCTTAACTACATCTCCAAAG
GCCCCTTTTCCCAATAAGCTTACATATGCGACTGCCAGGGATTTGACCTGGCTCTAGATC
TTTGGGGGGCCACCGTTCAACCCGCTTCAGGCCTCAGTTACCTTCTCTGTAAAATGGGGA
TGGTCATAATAGCACCTGCTTTGCAGGCTGATGAGGGTTCAATGAGTTAGCATAGCTCCT
GGGATGTATTACATATGACTAGTGCTATTCCTAAACTAAAGAGGGAAAGAGCCACCCCTT
GCAAAGGCTAGAGTGGGTGGGGGAACAGGACATGTCCCTGACTGGTGCCCGGGGAACATG
TGCCTCAGGCAGCTGCCAACAACCTCTCCTCCCTCACCTCCCACAGACAACGGCCCCGTG
GGCAAGCGGCGCACAGGCACAGCCACCGTGTTTGTCACCGTCCTGGATGTGAATGACAAC
CGGCCCATTTTTCTGCAGAGCAGCTACGAGGCCAGTGTCCCCGAGGACATCCCTGAGGGC
CACAGCATCGTGCAGGCAAGTGGCCTGCCAGGGGCAGGCACAGGGCAGCACATGCCCAGG
GGCAACGCGGCAGGACGGGATAGAAGCAGGAGAGGGTCCAGCTGCTGC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-579, gnl|bosTau2|chr28 (21289960-21289433)
               

               
               6-579, gnl|Hg17|chr10 (73141984-73142612)
               

               
               6-579, gnl|Mm7|chr10 (59924996-59924461)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-579, gnl|bosTau2|chr28 (21289960-21289433)
               

               
               6-579, gnl|Hg17|chr10 (73141984-73142612)
               

               
               6-579, gnl|Mm7|chr10 (59924996-59924461)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fbs (0.175346)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               hyp (0.142837)

	6-579, gnl\|bosTau2\|chr28 (21289960-21289433)
	6-579, gnl\|Hg17\|chr10 (73141984-73142612)
	6-579, gnl\|Mm7\|chr10 (59924996-59924461)