Non-Coding RNA Search

Ss1.1-rhyp22c_b22.5

Sequence:


               
               TTCCAGAACATCTTTTCCCTCAGGACAAAATGCCTAGGACTAAGTACAACACGTTCTTAG
GACTTGGGAATCTCAAGAAAAGATGAAGGGGTGGGGGGACCACAGCGTTCAATCTTCCTT
CTGCCCGTGGACAGTAGAGGGGGAGAGAGAGTCAGCATCTTGCTGAGATGAGCATCTCAC
GTCTCCTTACCCCTCATCCAGCCACGTCTCTAACGGTGAGACTTTTCAGATGGCAGAGAC
TTCATTGACAATAAGTCAGCCTGCCTGGTCAGTAGGTAGTCTTACCAGCCTGAAGAGGAA
CTCACATGAGAAAGCAGCTTGATCCAAGACCTGGAAGATTGGCCGAGATTGAAAGTCCCC
ATTCAGACAAAAATATCACCACCTGACTTGCTTCTGAGAAGGGAGTTGAAAAGCTGAGTC
TCCATGGAGAGAGTGGTGATTTGTCTTTGATGTTCCCTTAACTCTTGTGGATATAAAACC
AATCTGTCCCCCCCCCAGTTCTTTTTTTTTTTTTTTTAAACCTGGATTCTTGACAATGCA
GAGCAGTTCTGAGCAGGCACAAAGCCCCCCTCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCAGAACATCTTTTCCCTCAGGACAAAATGCCTAGGACTAAGTACAACACGTTCTTAG
GACTTGGGAATCTCAAGAAAAGATGAAGGGGTGGGGGGACCACAGCGTTCAATCTTCCTT
CTGCCCGTGGACAGTAGAGGGGGAGAGAGAGTCAGCATCTTGCTGAGATGAGCATCTCAC
GTCTCCTTACCCCTCATCCAGCCACGTCTCTAACGGTGAGACTTTTCAGATGGCAGAGAC
TTCATTGACAATAAGTCAGCCTGCCTGGTCAGTAGGTAGTCTTACCAGCCTGAAGAGGAA
CTCACATGAGAAAGCAGCTTGATCCAAGACCTGGAAGATTGGCCGAGATTGAAAGTCCCC
ATTCAGACAAAAATATCACCACCTGACTTGCTTCTGAGAAGGGAGTTGAAAAGCTGAGTC
TCCATGGAGAGAGTGGTGATTTGTCTTTGATGTTCCCTTAACTCTTGTGGATATAAAACC
AATCTGTCCCCCCCCCAGTTCTTTTTTTTTTTTTTTTAAACCTGGATTCTTGACAATGCA
GAGCAGTTCTGAGCAGGCACAAAGCCCCCCTCTCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               216-317, - strand, RNAz p=0.562455

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               216-317, - strand, RNAz p=0.562455

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               53-576, gnl|bosTau2|chr3 (10719954-10719432)
               

               
               53-576, gnl|Hg17|chr1 (152665907-152666757)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-576, gnl|bosTau2|chr3 (10719954-10719432)
               

               
               53-576, gnl|Hg17|chr1 (152665907-152666757)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               fcc (0.39557)
               

               
               hyp (0.285673)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               hyp (0.285673)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)

	53-576, gnl\|bosTau2\|chr3 (10719954-10719432)
	53-576, gnl\|Hg17\|chr1 (152665907-152666757)