Non-Coding RNA Search

Ss1.1-rhyp22c_c10.5

Sequence:


               
               GAGCCAGCAGCTGACCAGCAGGCGCACCCGCACGCCCCTGCCGACGGCCGCCACCCGCAG
CGCCGTGTCCAGCGCCGGCCAGTATCTGGGGGGGTGGCGGAAGCGGGAGGTGGGGAAATA
CTCCATCACCGAGGCGTAGATGAACTCCCGGGCACCCCCCATCACCGCCAGCAGCGCATC
CAGGTCCCGGGTGCGGCCAGCCGGGCAGAGTGCGGGCGGCGAAGCCGAGAAGTAGGCAGC
GGTGGGCACCCCGTCAAAGTGGTCCTGGAAGGGGTGGAAGCGGTTGAAGTGGGTGGAGAC
GTTCCGGGGCCAGGGTTTGGGGAGGACAGCCTTCGGCGCCCCCAACACCCAGTAGGTCTG
GAAGGTCTTCTCCAGGTCCCGGGCCAGGCGGCTGCAGTTGTAGATGATGGCGCCGAGCTC
CTTCACCTGTGTCAGGGACCGCCAGTCCATGTTGGCGCTGCCCACGTAGACGTGCCGCCC
ATCCACGACCCAGAATTTGGAGTGCAAGACGCCGCCGGTGAACTTCCCCATGGGCACCTG
TCGCACCTGGGCTCCTCGGGCCGCCAGGACCTGCAGGTCGGTGGACTTCCTGGCCAGTGT
CGGGGCGCTGGTGGCCACCACCAGGGAGACGTTCCTATCCAGCAGCTCCTGCAGCTTCTG
CAGAAGGGCCTCTCCCAGCCGTGAGGACGAGTCGTTGACCCCAATGTCAGGCCCTGTGAG
AGACCAGTAGAAGGAGGCCACGTGGATGCTCTCCTGGGCGGCGTCCAGCAGCTGCAGCCA
GGCCTGGGCCAGGGGCTGGGCGGACGGACTGCCCACCACAGACGGCAGGTCCTGAGGGAT
GCTCTCCACGAGGACAAGCCGGCAGGAGTCATTCTGCAGCTGCCGGGCCTCCCCTCCCAG
GGCCTCCCAGGCCAGGCTGGAGCCAAGGCCCCAAGTCTCGGGGGGCCCTTCGTCAGGGTG
CACTTGGCCCTGGGTGGGAGGAGAGAGCACCAGCCACAGGAGGCAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCAGCAGCTGACCAGCAGGCGCACCCGCACGCCCCTGCCGACGGCCGCCACCCGCAG
CGCCGTGTCCAGCGCCGGCCAGTATCTGGGGGGGTGGCGGAAGCGGGAGGTGGGGAAATA
CTCCATCACCGAGGCGTAGATGAACTCCCGGGCACCCCCCATCACCGCCAGCAGCGCATC
CAGGTCCCGGGTGCGGCCAGCCGGGCAGAGTGCGGGCGGCGAAGCCGAGAAGTAGGCAGC
GGTGGGCACCCCGTCAAAGTGGTCCTGGAAGGGGTGGAAGCGGTTGAAGTGGGTGGAGAC
GTTCCGGGGCCAGGGTTTGGGGAGGACAGCCTTCGGCGCCCCCAACACCCAGTAGGTCTG
GAAGGTCTTCTCCAGGTCCCGGGCCAGGCGGCTGCAGTTGTAGATGATGGCGCCGAGCTC
CTTCACCTGTGTCAGGGACCGCCAGTCCATGTTGGCGCTGCCCACGTAGACGTGCCGCCC
ATCCACGACCCAGAATTTGGAGTGCAAGACGCCGCCGGTGAACTTCCCCATGGGCACCTG
TCGCACCTGGGCTCCTCGGGCCGCCAGGACCTGCAGGTCGGTGGACTTCCTGGCCAGTGT
CGGGGCGCTGGTGGCCACCACCAGGGAGACGTTCCTATCCAGCAGCTCCTGCAGCTTCTG
CAGAAGGGCCTCTCCCAGCCGTGAGGACGAGTCGTTGACCCCAATGTCAGGCCCTGTGAG
AGACCAGTAGAAGGAGGCCACGTGGATGCTCTCCTGGGCGGCGTCCAGCAGCTGCAGCCA
GGCCTGGGCCAGGGGCTGGGCGGACGGACTGCCCACCACAGACGGCAGGTCCTGAGGGAT
GCTCTCCACGAGGACAAGCCGGCAGGAGTCATTCTGCAGCTGCCGGGCCTCCCCTCCCAG
GGCCTCCCAGGCCAGGCTGGAGCCAAGGCCCCAAGTCTCGGGGGGCCCTTCGTCAGGGTG
CACTTGGCCCTGGGTGGGAGGAGAGAGCACCAGCCACAGGAGGCAGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61858110|ref|XP_601438.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61858110|ref|XP_601438.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               736-855, + strand, RNAz p=0.865511
               

               
               875-1007, - strand, RNAz p=0.965398

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               736-855, + strand, RNAz p=0.865511
               

               
               875-1007, - strand, RNAz p=0.965398

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               74-226, gnl|bosTau2|chr21 (48794193-48794343)
               

               
               74-226, gnl|canFam2|chr8 (75460720-75460893)
               

               
               74-226, gnl|danRer3|chrUn (24183965-24183794)
               

               
               74-226, gnl|echTel1|scaffold_253684 (247-59)
               

               
               74-226, gnl|fr1|chrUn (60028615-60028439)
               

               
               74-226, gnl|galGal2|chr5 (48581332-48581491)
               

               
               74-226, gnl|hg17|chr14 (104469112-104469295)
               

               
               74-226, gnl|Hg17|chr14 (104469280-104469129)
               

               
               74-226, gnl|mm7|chr12 (110292425-110292599)
               

               
               74-226, gnl|Mm7|chr12 (110292593-110292442)
               

               
               74-226, gnl|monDom2|scaffold_6 (91840041-91840205)
               

               
               74-226, gnl|rheMac2|chr7 (168300765-168300948)
               

               
               74-226, gnl|rn3|chr6 (137756910-137757084)
               

               
               74-226, gnl|tetNig1|chr10 (3827228-3827069)
               


               
               425-579, gnl|bosTau2|chr18 (41430943-41430791)
               

               
               425-579, gnl|Hg17|chr19 (45567986-45567833)
               

               
               425-579, gnl|Mm7|chr7 (24459827-24459980)
               


               
               665-865, gnl|bosTau2|chr21 (48796629-48796830)
               

               
               665-865, gnl|Hg17|chr14 (104466334-104466125)
               

               
               665-865, gnl|Mm7|chr12 (110289100-110288902)
               


               
               875-1007, gnl|bosTau2|chr21 (48797465-48797597)
               

               
               875-1007, gnl|Hg17|chr14 (104465228-104465107)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-226, gnl|bosTau2|chr21 (48794193-48794343)
               

               
               74-226, gnl|canFam2|chr8 (75460720-75460893)
               

               
               74-226, gnl|danRer3|chrUn (24183965-24183794)
               

               
               74-226, gnl|echTel1|scaffold_253684 (247-59)
               

               
               74-226, gnl|fr1|chrUn (60028615-60028439)
               

               
               74-226, gnl|galGal2|chr5 (48581332-48581491)
               

               
               74-226, gnl|hg17|chr14 (104469112-104469295)
               

               
               74-226, gnl|Hg17|chr14 (104469280-104469129)
               

               
               74-226, gnl|mm7|chr12 (110292425-110292599)
               

               
               74-226, gnl|Mm7|chr12 (110292593-110292442)
               

               
               74-226, gnl|monDom2|scaffold_6 (91840041-91840205)
               

               
               74-226, gnl|rheMac2|chr7 (168300765-168300948)
               

               
               74-226, gnl|rn3|chr6 (137756910-137757084)
               

               
               74-226, gnl|tetNig1|chr10 (3827228-3827069)
               


               
               425-579, gnl|bosTau2|chr18 (41430943-41430791)
               

               
               425-579, gnl|Hg17|chr19 (45567986-45567833)
               

               
               425-579, gnl|Mm7|chr7 (24459827-24459980)
               


               
               665-865, gnl|bosTau2|chr21 (48796629-48796830)
               

               
               665-865, gnl|Hg17|chr14 (104466334-104466125)
               

               
               665-865, gnl|Mm7|chr12 (110289100-110288902)
               


               
               875-1007, gnl|bosTau2|chr21 (48797465-48797597)
               

               
               875-1007, gnl|Hg17|chr14 (104465228-104465107)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hyp (0.285673)
               

               
               nje (0.16592)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               nje (0.16592)
               

               
               cty (0.10408)

	736-855, + strand, RNAz p=0.865511
	875-1007, - strand, RNAz p=0.965398

	74-226, gnl\|bosTau2\|chr21 (48794193-48794343)
	74-226, gnl\|canFam2\|chr8 (75460720-75460893)
	74-226, gnl\|danRer3\|chrUn (24183965-24183794)
	74-226, gnl\|echTel1\|scaffold_253684 (247-59)
	74-226, gnl\|fr1\|chrUn (60028615-60028439)
	74-226, gnl\|galGal2\|chr5 (48581332-48581491)
	74-226, gnl\|hg17\|chr14 (104469112-104469295)
	74-226, gnl\|Hg17\|chr14 (104469280-104469129)
	74-226, gnl\|mm7\|chr12 (110292425-110292599)
	74-226, gnl\|Mm7\|chr12 (110292593-110292442)
	74-226, gnl\|monDom2\|scaffold_6 (91840041-91840205)
	74-226, gnl\|rheMac2\|chr7 (168300765-168300948)
	74-226, gnl\|rn3\|chr6 (137756910-137757084)
	74-226, gnl\|tetNig1\|chr10 (3827228-3827069)

	425-579, gnl\|bosTau2\|chr18 (41430943-41430791)
	425-579, gnl\|Hg17\|chr19 (45567986-45567833)
	425-579, gnl\|Mm7\|chr7 (24459827-24459980)

	665-865, gnl\|bosTau2\|chr21 (48796629-48796830)
	665-865, gnl\|Hg17\|chr14 (104466334-104466125)
	665-865, gnl\|Mm7\|chr12 (110289100-110288902)

	875-1007, gnl\|bosTau2\|chr21 (48797465-48797597)
	875-1007, gnl\|Hg17\|chr14 (104465228-104465107)