Non-Coding RNA Search

Ss1.1-rhyp22c_c14.5

Sequence:


               
               GTGGGAAGCGACAGCCCCGCTCAATCCCTCCAGCAACTGTCTCTCTTCTCTGCGACTGAA
GTGGGGAGCCAGCGCGCCGAGCCCGGGAGGATGCAGTGCCCGCTGTGGCCTGGGGGCTCC
CAGGGGCTCTGGCTGCTCCTCTGCTTCCTGCTGCTGAACAGCCACACTGGGGGCTGCAGC
GACATTAGTGGCCACGATGGTCAGGGCCAAGTGGGAGTGGGGCAGCTCTGGCCCCTCCAA
GGATTTACCACCCCGATCTTCCAGCATTTGCAAGTTGTACTCCAGCAGATTGTGCCCCAA
GGTTTGTTCTGGAAGGATGACATGACCCAGAATGTGATGACCCAGAAGATGGGGCATATC
AGCCAACTCCACCCCCAGGATCCATGTGTGAGGGTTGGGCAGGCAGCCTCTCCCACCAAA
ACCACTGGGGCAAGGGGCAAACAAGAGGAGAAACTTCGACTCCTATTCCCCAAGAGCCCA
GTGGTCAAGGTGAACAGGGATCAGTGCTTTACCTCCAAAGTGGTTGCAAAGGCCCTGAAA
CGAGAGGTGGCCACTCCTGCCAAGGGCTTCTTTGAGTCATCCCACACCGTGGGCCACAAC
CTTGTCGCTGACTGAGACCTCGTGCGAAGCCTTTTGCCCCAGTGCCCTTCCCTTTGCCCT
CCCAAGGGGCAGTTCCAGCATGACCTGAATCTGGATCATTAAAGTGACTTTCACGCAAAA
AAAAAAAAAAAAGCCCTGAGGCAGGATGGGTGATGTTTTGACCTGGCCAGGACCTCTGAC
CTGAGAGTGGGGGGACCAGAACAGGGGGATGGGGTGAGGAGAGCACAGTTGCTCCTTACT
GCTAGAAGGCTGCCTCTGTCTTGTTTTTCTTCCAGTGACCATTCCAGAAGTGGGAAGAGC
GAGGGTGGGCCCGCAGCTGGAATAGCAACCTTCTTTACCCACACCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGGAAGCGACAGCCCCGCTCAATCCCTCCAGCAACTGTCTCTCTTCTCTGCGACTGAA
GTGGGGAGCCAGCGCGCCGAGCCCGGGAGGATGCAGTGCCCGCTGTGGCCTGGGGGCTCC
CAGGGGCTCTGGCTGCTCCTCTGCTTCCTGCTGCTGAACAGCCACACTGGGGGCTGCAGC
GACATTAGTGGCCACGATGGTCAGGGCCAAGTGGGAGTGGGGCAGCTCTGGCCCCTCCAA
GGATTTACCACCCCGATCTTCCAGCATTTGCAAGTTGTACTCCAGCAGATTGTGCCCCAA
GGTTTGTTCTGGAAGGATGACATGACCCAGAATGTGATGACCCAGAAGATGGGGCATATC
AGCCAACTCCACCCCCAGGATCCATGTGTGAGGGTTGGGCAGGCAGCCTCTCCCACCAAA
ACCACTGGGGCAAGGGGCAAACAAGAGGAGAAACTTCGACTCCTATTCCCCAAGAGCCCA
GTGGTCAAGGTGAACAGGGATCAGTGCTTTACCTCCAAAGTGGTTGCAAAGGCCCTGAAA
CGAGAGGTGGCCACTCCTGCCAAGGGCTTCTTTGAGTCATCCCACACCGTGGGCCACAAC
CTTGTCGCTGACTGAGACCTCGTGCGAAGCCTTTTGCCCCAGTGCCCTTCCCTTTGCCCT
CCCAAGGGGCAGTTCCAGCATGACCTGAATCTGGATCATTAAAGTGACTTTCACGCAAAA
AAAAAAAAAAAAGCCCTGAGGCAGGATGGGTGATGTTTTGACCTGGCCAGGACCTCTGAC
CTGAGAGTGGGGGGACCAGAACAGGGGGATGGGGTGAGGAGAGCACAGTTGCTCCTTACT
GCTAGAAGGCTGCCTCTGTCTTGTTTTTCTTCCAGTGACCATTCCAGAAGTGGGAAGAGC
GAGGGTGGGCCCGCAGCTGGAATAGCAACCTTCTTTACCCACACCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5W5W9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5W5W9_HUMAN

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-222, gnl|bosTau2|chr2 (65267245-65267026)
               

               
               1-222, gnl|Hg17|chr2 (220022947-220022730)
               

               
               1-222, gnl|Mm7|chr1 (75504885-75504654)
               


               
               300-435, gnl|bosTau2|chr2 (65264177-65264042)
               

               
               300-435, gnl|canFam2|chr37 (28866425-28866586)
               

               
               300-435, gnl|dasNov1|scaffold_6587 (17236-17075)
               

               
               300-435, gnl|echTel1|scaffold_245993 (2258-2084)
               

               
               300-435, gnl|hg17|chr2 (220019855-220020018)
               

               
               300-435, gnl|Hg17|chr2 (220019993-220019858)
               

               
               300-435, gnl|loxAfr1|scaffold_145 (158054-158215)
               

               
               300-435, gnl|mm7|chr1 (75500566-75500727)
               

               
               300-435, gnl|Mm7|chr1 (75500704-75500569)
               

               
               300-435, gnl|oryCun1|scaffold_198528 (182958-183118)
               

               
               300-435, gnl|panTro1|chr13 (110183338-110183501)
               

               
               300-435, gnl|rheMac2|chr12 (83180137-83180298)
               

               
               300-435, gnl|rn3|chr9 (74701026-74701187)
               


               
               563-947, gnl|bosTau2|chr2 (65261996-65261631)
               

               
               563-947, gnl|Hg17|chr2 (220017792-220017406)
               

               
               563-947, gnl|Mm7|chr1 (75498475-75498108)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-222, gnl|bosTau2|chr2 (65267245-65267026)
               

               
               1-222, gnl|Hg17|chr2 (220022947-220022730)
               

               
               1-222, gnl|Mm7|chr1 (75504885-75504654)
               


               
               300-435, gnl|bosTau2|chr2 (65264177-65264042)
               

               
               300-435, gnl|canFam2|chr37 (28866425-28866586)
               

               
               300-435, gnl|dasNov1|scaffold_6587 (17236-17075)
               

               
               300-435, gnl|echTel1|scaffold_245993 (2258-2084)
               

               
               300-435, gnl|hg17|chr2 (220019855-220020018)
               

               
               300-435, gnl|Hg17|chr2 (220019993-220019858)
               

               
               300-435, gnl|loxAfr1|scaffold_145 (158054-158215)
               

               
               300-435, gnl|mm7|chr1 (75500566-75500727)
               

               
               300-435, gnl|Mm7|chr1 (75500704-75500569)
               

               
               300-435, gnl|oryCun1|scaffold_198528 (182958-183118)
               

               
               300-435, gnl|panTro1|chr13 (110183338-110183501)
               

               
               300-435, gnl|rheMac2|chr12 (83180137-83180298)
               

               
               300-435, gnl|rn3|chr9 (74701026-74701187)
               


               
               563-947, gnl|bosTau2|chr2 (65261996-65261631)
               

               
               563-947, gnl|Hg17|chr2 (220017792-220017406)
               

               
               563-947, gnl|Mm7|chr1 (75498475-75498108)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               hyp (1.14269)
               

               
               pgl (0.473934)
               

               
               cbr (0.255951)
               

               
               ece (0.229305)
               

               
               fhi (0.169578)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (1.14269)
               

               
               pgl (0.473934)
               

               
               cbr (0.255951)
               

               
               ece (0.229305)
               

               
               fhi (0.169578)

	1-222, gnl\|bosTau2\|chr2 (65267245-65267026)
	1-222, gnl\|Hg17\|chr2 (220022947-220022730)
	1-222, gnl\|Mm7\|chr1 (75504885-75504654)

	300-435, gnl\|bosTau2\|chr2 (65264177-65264042)
	300-435, gnl\|canFam2\|chr37 (28866425-28866586)
	300-435, gnl\|dasNov1\|scaffold_6587 (17236-17075)
	300-435, gnl\|echTel1\|scaffold_245993 (2258-2084)
	300-435, gnl\|hg17\|chr2 (220019855-220020018)
	300-435, gnl\|Hg17\|chr2 (220019993-220019858)
	300-435, gnl\|loxAfr1\|scaffold_145 (158054-158215)
	300-435, gnl\|mm7\|chr1 (75500566-75500727)
	300-435, gnl\|Mm7\|chr1 (75500704-75500569)
	300-435, gnl\|oryCun1\|scaffold_198528 (182958-183118)
	300-435, gnl\|panTro1\|chr13 (110183338-110183501)
	300-435, gnl\|rheMac2\|chr12 (83180137-83180298)
	300-435, gnl\|rn3\|chr9 (74701026-74701187)

	563-947, gnl\|bosTau2\|chr2 (65261996-65261631)
	563-947, gnl\|Hg17\|chr2 (220017792-220017406)
	563-947, gnl\|Mm7\|chr1 (75498475-75498108)

	hyp (1.14269)
	pgl (0.473934)
	cbr (0.255951)
	ece (0.229305)
	fhi (0.169578)