Ss1.1-rhyp22c_e10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGGAGGACGGGTGGGTGCCCTCGCCCCCGCGATACGCGCTGGAGCTCAGTCGCCGCCT CTGCTGCCACCACCATGCCGCCTTACACGATCACCTACTTCCCCGTTCGAGGGCGCTGCG AGGCCATGCGCATGCTGCTGGCCGACCAGGATCAGAGCTGGAAGGAGGAGGTGGTGACTA TGGAGACCTGGCCTCCTCTCAAGCCCTCCTGCCTGTTCCGGCAGCTCCCGAAGTTCCAGG ACGGAGACCTCACCCTGTACCAGTCCAATGCCATCCTGCGCCACCTGGGCCGCTCCTTTG GACTGTATGGAAAGGACCAGAAGGAGGCGGCCCTGGTGGACATGGTGAATGACGGCGTGG AGGACCTCCGCTGCAAATATGCCACCCTCATCTACACCAACTACGAGGCAGGGAAGGAGA AGTACGTGAAGGAGCTGCCCGAGCACCTGAAGCCCTTTGAGACCCTGCTGTCCCAGAACC AGGGGGGCCAGGCCTTCGTCGTGGGCAGCCAGATCTCCTTTGCCGACTACAACCTGCTGG ACCTGCTTCGGATTCACCAGGTCCTGAACCCCAGCTGCCTGGATGCCTTCCCTCTGCTCT CGGCCTACGTGGCCCGCCTCAGCGCCCGGCCCAAGATCAAGGCCTTCCTGGCCTCCCCCG AGCATGTGAACCGCCCCATCAACGGCAACGGGAAACAGTAAGGGCTTTGTGGCTGGAGGC GGGAGCCGCCTGCTTCCCTTTCTCCAGGACCAATAAAATTTCCCAGAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGGAGGACGGGTGGGTGCCCTCGCCCCCGCGATACGCGCTGGAGCTCAGTCGCCGCCT CTGCTGCCACCACCATGCCGCCTTACACGATCACCTACTTCCCCGTTCGAGGGCGCTGCG AGGCCATGCGCATGCTGCTGGCCGACCAGGATCAGAGCTGGAAGGAGGAGGTGGTGACTA TGGAGACCTGGCCTCCTCTCAAGCCCTCCTGCCTGTTCCGGCAGCTCCCGAAGTTCCAGG ACGGAGACCTCACCCTGTACCAGTCCAATGCCATCCTGCGCCACCTGGGCCGCTCCTTTG GACTGTATGGAAAGGACCAGAAGGAGGCGGCCCTGGTGGACATGGTGAATGACGGCGTGG AGGACCTCCGCTGCAAATATGCCACCCTCATCTACACCAACTACGAGGCAGGGAAGGAGA AGTACGTGAAGGAGCTGCCCGAGCACCTGAAGCCCTTTGAGACCCTGCTGTCCCAGAACC AGGGGGGCCAGGCCTTCGTCGTGGGCAGCCAGATCTCCTTTGCCGACTACAACCTGCTGG ACCTGCTTCGGATTCACCAGGTCCTGAACCCCAGCTGCCTGGATGCCTTCCCTCTGCTCT CGGCCTACGTGGCCCGCCTCAGCGCCCGGCCCAAGATCAAGGCCTTCCTGGCCTCCCCCG AGCATGTGAACCGCCCCATCAACGGCAACGGGAAACAGTAAGGGCTTTGTGGCTGGAGGC GGGAGCCGCCTGCTTCCCTTTCTCCAGGACCAATAAAATTTCCCAGAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 110-215, gnl|bosTau2|chr29 (39621041-39620930) | |
| 110-215, gnl|canFam2|chr18 (52933405-52933298) | |
| 110-215, gnl|danRer3|chr1 (5929391-5929283) | |
| 110-215, gnl|dasNov1|scaffold_142855 (428-536) | |
| 110-215, gnl|echTel1|scaffold_319577 (39754-39652) | |
| 110-215, gnl|galGal2|chrUn (19311963-19311837) | |
| 110-215, gnl|hg17|chr11 (67108502-67108610) | |
| 110-215, gnl|Hg17|chr11 (67108509-67108620) | |
| 110-215, gnl|loxAfr1|scaffold_82281 (985-1087) | |
| 110-215, gnl|mm7|chr19 (3932216-3932105) | |
| 110-215, gnl|Mm7|chr19 (3932204-3932093) | |
| 110-215, gnl|monDom2|scaffold_226 (654563-654478) | |
| 110-215, gnl|oryCun1|scaffold_127420 (4034-4136) | |
| 110-215, gnl|panTro1|chr9_random (30702899-30702791) | |
| 110-215, gnl|rheMac2|chr14 (6865882-6865774) | |
| 110-215, gnl|rn3|chr1 (206782827-206782716) | |
| 300-405, gnl|bosTau2|chr29 (39620187-39620082) | |
| 300-405, gnl|canFam2|chr18 (52932732-52932620) | |
| 300-405, gnl|danRer3|chr1 (5926285-5926180) | |
| 300-405, gnl|dasNov1|scaffold_142855 (1126-1238) | |
| 300-405, gnl|echTel1|scaffold_104485 (2155-2050) | |
| 300-405, gnl|hg17|chr11 (67109184-67109296) | |
| 300-405, gnl|Hg17|chr11 (67109184-67109289) | |
| 300-405, gnl|mm7|chr19 (3931600-3931488) | |
| 300-405, gnl|Mm7|chr19 (3931598-3931493) | |
| 300-405, gnl|monDom2|scaffold_226 (653910-653798) | |
| 300-405, gnl|oryCun1|scaffold_127420 (4609-4721) | |
| 300-405, gnl|panTro1|chr9_random (30702218-30702106) | |
| 300-405, gnl|rn3|chr1 (206782195-206782083) | |
| 510-772, gnl|bosTau2|chr29 (39619024-39618751) | |
| 510-772, gnl|canFam2|chr18 (52931486-52931255) | |
| 510-772, gnl|canFam2|chrX (10574346-10574542) | |
| 510-772, gnl|danRer3|chr1 (5936203-5936015) | |
| 510-772, gnl|danRer3|chr1 (5925900-5925686) | |
| 510-772, gnl|dasNov1|scaffold_172797 (1062-874) | |
| 510-772, gnl|dasNov1|scaffold_172797 (1105-873) | |
| 510-772, gnl|echTel1|scaffold_104485 (1941-1746) | |
| 510-772, gnl|echTel1|scaffold_319577 (37767-37534) | |
| 510-772, gnl|hg17|chr11 (67110401-67110626) | |
| 510-772, gnl|Hg17|chr11 (67110433-67110700) | |
| 510-772, gnl|hg17|chr12 (54580491-54580684) | |
| 510-772, gnl|loxAfr1|scaffold_152343 (4331-4502) | |
| 510-772, gnl|loxAfr1|scaffold_152343 (4294-4502) | |
| 510-772, gnl|mm7|chr1 (191626925-191626729) | |
| 510-772, gnl|mm7|chr19 (3930504-3930279) | |
| 510-772, gnl|Mm7|chr19 (3930470-3930213) | |
| 510-772, gnl|monDom2|scaffold_226 (652857-652656) | |
| 510-772, gnl|monDom2|scaffold_226 (652889-652663) | |
| 510-772, gnl|oryCun1|scaffold_79330 (616-420) | |
| 510-772, gnl|oryCun1|scaffold_79330 (651-427) | |
| 510-772, gnl|panTro1|chr10 (55808871-55809064) | |
| 510-772, gnl|panTro1|chr9_random (30701006-30700781) | |
| 510-772, gnl|rheMac2|chr11 (52951879-52952071) | |
| 510-772, gnl|rheMac2|chr14 (6863976-6863751) | |
| 510-772, gnl|rn3|chr1 (206781142-206780917) | |
| 510-772, gnl|rn3|chr16 (40846166-40846361) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 110-215, gnl|bosTau2|chr29 (39621041-39620930) | |
| 110-215, gnl|canFam2|chr18 (52933405-52933298) | |
| 110-215, gnl|danRer3|chr1 (5929391-5929283) | |
| 110-215, gnl|dasNov1|scaffold_142855 (428-536) | |
| 110-215, gnl|echTel1|scaffold_319577 (39754-39652) | |
| 110-215, gnl|galGal2|chrUn (19311963-19311837) | |
| 110-215, gnl|hg17|chr11 (67108502-67108610) | |
| 110-215, gnl|Hg17|chr11 (67108509-67108620) | |
| 110-215, gnl|loxAfr1|scaffold_82281 (985-1087) | |
| 110-215, gnl|mm7|chr19 (3932216-3932105) | |
| 110-215, gnl|Mm7|chr19 (3932204-3932093) | |
| 110-215, gnl|monDom2|scaffold_226 (654563-654478) | |
| 110-215, gnl|oryCun1|scaffold_127420 (4034-4136) | |
| 110-215, gnl|panTro1|chr9_random (30702899-30702791) | |
| 110-215, gnl|rheMac2|chr14 (6865882-6865774) | |
| 110-215, gnl|rn3|chr1 (206782827-206782716) | |
| 300-405, gnl|bosTau2|chr29 (39620187-39620082) | |
| 300-405, gnl|canFam2|chr18 (52932732-52932620) | |
| 300-405, gnl|danRer3|chr1 (5926285-5926180) | |
| 300-405, gnl|dasNov1|scaffold_142855 (1126-1238) | |
| 300-405, gnl|echTel1|scaffold_104485 (2155-2050) | |
| 300-405, gnl|hg17|chr11 (67109184-67109296) | |
| 300-405, gnl|Hg17|chr11 (67109184-67109289) | |
| 300-405, gnl|mm7|chr19 (3931600-3931488) | |
| 300-405, gnl|Mm7|chr19 (3931598-3931493) | |
| 300-405, gnl|monDom2|scaffold_226 (653910-653798) | |
| 300-405, gnl|oryCun1|scaffold_127420 (4609-4721) | |
| 300-405, gnl|panTro1|chr9_random (30702218-30702106) | |
| 300-405, gnl|rn3|chr1 (206782195-206782083) | |
| 510-772, gnl|bosTau2|chr29 (39619024-39618751) | |
| 510-772, gnl|canFam2|chr18 (52931486-52931255) | |
| 510-772, gnl|canFam2|chrX (10574346-10574542) | |
| 510-772, gnl|danRer3|chr1 (5936203-5936015) | |
| 510-772, gnl|danRer3|chr1 (5925900-5925686) | |
| 510-772, gnl|dasNov1|scaffold_172797 (1062-874) | |
| 510-772, gnl|dasNov1|scaffold_172797 (1105-873) | |
| 510-772, gnl|echTel1|scaffold_104485 (1941-1746) | |
| 510-772, gnl|echTel1|scaffold_319577 (37767-37534) | |
| 510-772, gnl|hg17|chr11 (67110401-67110626) | |
| 510-772, gnl|Hg17|chr11 (67110433-67110700) | |
| 510-772, gnl|hg17|chr12 (54580491-54580684) | |
| 510-772, gnl|loxAfr1|scaffold_152343 (4331-4502) | |
| 510-772, gnl|loxAfr1|scaffold_152343 (4294-4502) | |
| 510-772, gnl|mm7|chr1 (191626925-191626729) | |
| 510-772, gnl|mm7|chr19 (3930504-3930279) | |
| 510-772, gnl|Mm7|chr19 (3930470-3930213) | |
| 510-772, gnl|monDom2|scaffold_226 (652857-652656) | |
| 510-772, gnl|monDom2|scaffold_226 (652889-652663) | |
| 510-772, gnl|oryCun1|scaffold_79330 (616-420) | |
| 510-772, gnl|oryCun1|scaffold_79330 (651-427) | |
| 510-772, gnl|panTro1|chr10 (55808871-55809064) | |
| 510-772, gnl|panTro1|chr9_random (30701006-30700781) | |
| 510-772, gnl|rheMac2|chr11 (52951879-52952071) | |
| 510-772, gnl|rheMac2|chr14 (6863976-6863751) | |
| 510-772, gnl|rn3|chr1 (206781142-206780917) | |
| 510-772, gnl|rn3|chr16 (40846166-40846361) |
| Expressed library(ies): 53 entry(ies) | More info |
| Expressed library(ies): 53 entry(ies) | Help | Less info |
| col (2.14509) | |
| cly (1.93027) | |
| ill (1.40474) | |
| cag (1.36075) | |
| nlu (1.34177) | |
| csp (1.28949) | |
| jej (1.28598) | |
| ton (1.2285) | |
| mcp (1.19454) | |
| cov (1.18937) | |
| fhi (1.18704) | |
| elu (1.15607) | |
| ece (1.14653) | |
| hyp (1.14269) | |
| fce (1.08637) | |
| eep (0.980512) | |
| eru (0.960384) | |
| ecc (0.920281) | |
| lnt (0.853849) | |
| cga (0.837287) | |
| amn (0.835422) | |
| nco (0.808669) | |
| eje (0.691836) | |
| fcc (0.593354) | |
| ebs (0.591506) | |
| pty (0.570858) | |
| nca (0.547495) | |
| fbs (0.526039) | |
| eye (0.511509) | |
| nje (0.49776) | |
| nms (0.427716) | |
| med (0.348756) | |
| duo (0.345602) | |
| cki (0.330469) | |
| cje (0.330469) | |
| cli (0.305623) | |
| che (0.272628) | |
| pla (0.267344) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| ese (0.253004) | |
| jca (0.22792) | |
| mas (0.210305) | |
| cty (0.20816) | |
| nep (0.183925) | |
| sto (0.179824) | |
| fty (0.17584) | |
| sin (0.174948) | |
| cst (0.140036) | |
| bla (0.124347) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| nbm (0.0993246) |
| Expressed library(ies): 53 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (2.14509) | |
| cly (1.93027) | |
| ill (1.40474) | |
| cag (1.36075) | |
| nlu (1.34177) | |
| csp (1.28949) | |
| jej (1.28598) | |
| ton (1.2285) | |
| mcp (1.19454) | |
| cov (1.18937) | |
| fhi (1.18704) | |
| elu (1.15607) | |
| ece (1.14653) | |
| hyp (1.14269) | |
| fce (1.08637) | |
| eep (0.980512) | |
| eru (0.960384) | |
| ecc (0.920281) | |
| lnt (0.853849) | |
| cga (0.837287) | |
| amn (0.835422) | |
| nco (0.808669) | |
| eje (0.691836) | |
| fcc (0.593354) | |
| ebs (0.591506) | |
| pty (0.570858) | |
| nca (0.547495) | |
| fbs (0.526039) | |
| eye (0.511509) | |
| nje (0.49776) | |
| nms (0.427716) | |
| med (0.348756) | |
| duo (0.345602) | |
| cki (0.330469) | |
| cje (0.330469) | |
| cli (0.305623) | |
| che (0.272628) | |
| pla (0.267344) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| ese (0.253004) | |
| jca (0.22792) | |
| mas (0.210305) | |
| cty (0.20816) | |
| nep (0.183925) | |
| sto (0.179824) | |
| fty (0.17584) | |
| sin (0.174948) | |
| cst (0.140036) | |
| bla (0.124347) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| nbm (0.0993246) |