Non-Coding RNA Search

Ss1.1-rhyp22c_e4.5

Sequence:


               
               CCGGCGCCGGCCAGCGCGACGAGGCCCAGAGGCCGGGGGGCGTCCGAGCGCCCGGCCGGT
CGGCAGCCCAGCTGCTCCTGGGGGAGCTCCCCCGCCCCTCCCCTCCTCTGCTCCTTCCTG
CATGGACTTCTGCCGTTCCTGCTCCGCTCCGGACGCCGCAGCCACGCCGCGCTTGCCTTC
CCCTCTCTTGGCCTCCCATTTCCTAGGATCCGCATTCGGGCGGGCTCTGCCCCAGGAGCC
CGGCGGGGGCGCAGGGCCTCTTCTGGCCTCTCTCCTCTCTCTCTCCATCCACTGTGCCCC
TCGGGCCTCGCTGCCGTGCTCGGCGCAGCGTGCCGTGCGGCGTCTGTGCCGCAGACGGGC
CACTGCCCGCTCACTTCTGGACTTTGCTCTCCCTGGTTGTCGTGCCCGAGCTCCCGGCCA
TCCCTCAGCCCCACCGTCCACCTCTCCTGGCCCTTCCCTCTTACGCCCCAGCCCCTGGGC
TGCGCGCTCCTCACGCCCTCGGTATCTCGTGTCCTTGCTCTTTTGTAAGGGGCGGGCCCG
GCCCAGTGACCTGTGCTGCTCTGTATGGTGCCGTGTGTAAGAATAAACCCGTTGGAATAC
TAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGCGCCGGCCAGCGCGACGAGGCCCAGAGGCCGGGGGGCGTCCGAGCGCCCGGCCGGT
CGGCAGCCCAGCTGCTCCTGGGGGAGCTCCCCCGCCCCTCCCCTCCTCTGCTCCTTCCTG
CATGGACTTCTGCCGTTCCTGCTCCGCTCCGGACGCCGCAGCCACGCCGCGCTTGCCTTC
CCCTCTCTTGGCCTCCCATTTCCTAGGATCCGCATTCGGGCGGGCTCTGCCCCAGGAGCC
CGGCGGGGGCGCAGGGCCTCTTCTGGCCTCTCTCCTCTCTCTCTCCATCCACTGTGCCCC
TCGGGCCTCGCTGCCGTGCTCGGCGCAGCGTGCCGTGCGGCGTCTGTGCCGCAGACGGGC
CACTGCCCGCTCACTTCTGGACTTTGCTCTCCCTGGTTGTCGTGCCCGAGCTCCCGGCCA
TCCCTCAGCCCCACCGTCCACCTCTCCTGGCCCTTCCCTCTTACGCCCCAGCCCCTGGGC
TGCGCGCTCCTCACGCCCTCGGTATCTCGTGTCCTTGCTCTTTTGTAAGGGGCGGGCCCG
GCCCAGTGACCTGTGCTGCTCTGTATGGTGCCGTGTGTAAGAATAAACCCGTTGGAATAC
TAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               451-549, - strand, RNAz p=0.929381

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               451-549, - strand, RNAz p=0.929381

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-601, gnl|bosTau2|chr4 (64473973-64473298)
               

               
               4-601, gnl|Hg17|chr7 (150257787-150258373)
               

               
               4-601, gnl|Mm7|chr5 (23523084-23523677)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-601, gnl|bosTau2|chr4 (64473973-64473298)
               

               
               4-601, gnl|Hg17|chr7 (150257787-150258373)
               

               
               4-601, gnl|Mm7|chr5 (23523084-23523677)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ece (0.45861)
               

               
               nlu (0.191681)
               

               
               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               nlu (0.191681)
               

               
               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	4-601, gnl\|bosTau2\|chr4 (64473973-64473298)
	4-601, gnl\|Hg17\|chr7 (150257787-150258373)
	4-601, gnl\|Mm7\|chr5 (23523084-23523677)

	ece (0.45861)
	nlu (0.191681)
	hyp (0.142837)
	eep (0.122564)
	jca (0.11396)