Non-Coding RNA Search

Ss1.1-rhyp22c_f12.5

Sequence:


               
               TGGTCCCAGAAGGCCATCACATCCAGGTGCAGGAGGGCCAGATCACACACATCCAGTATG
AACAAGGGGGCTCGTTCCTTCAGGAGTCCCAGATCCAGTATGTGCCTGTGTCCCCGGGCC
AACAGCTCGTCACACAGGCCCAGCTTGAGGCTGCAGCCCACTCAGCTGTCACAGCGGTGG
CCGATGCTGCCATGGCCCAAGCCCAAGGCCTGTTTGGCACAGAGGAGGCAGTGCCTGAAC
ACATCCAACAGCTGCAGCACCAGGGCATCGAGTACGACGTCATCACCCTGACCGATGACT
GAGCCCCAGGGGCCCTGACACAGAACACGGATTGGAGGGCCAGCCCTGCTGGGGGTGGGG
GACCCCTGCAAGCTCCCTGCCTGCTCCACGTGGGGTCTCCAGATAGCTGAGCAGCCAGCA
TCCTATCACTCCTGGGGAGCCAGACCTGTGCTGCTGGGGTTAGGGGACAGCCAAGGGGCC
CAGCCAGGACATGCTGGGTGTCCCAGCCTGCAGGCAGGCTTTGGGAAAGAAATTTATTTT
TGTTTGGATGGACCCACTGGTCCCTCATCAATAAAGGGGCCGGAGTCCAGCCCTGCACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTCCCAGAAGGCCATCACATCCAGGTGCAGGAGGGCCAGATCACACACATCCAGTATG
AACAAGGGGGCTCGTTCCTTCAGGAGTCCCAGATCCAGTATGTGCCTGTGTCCCCGGGCC
AACAGCTCGTCACACAGGCCCAGCTTGAGGCTGCAGCCCACTCAGCTGTCACAGCGGTGG
CCGATGCTGCCATGGCCCAAGCCCAAGGCCTGTTTGGCACAGAGGAGGCAGTGCCTGAAC
ACATCCAACAGCTGCAGCACCAGGGCATCGAGTACGACGTCATCACCCTGACCGATGACT
GAGCCCCAGGGGCCCTGACACAGAACACGGATTGGAGGGCCAGCCCTGCTGGGGGTGGGG
GACCCCTGCAAGCTCCCTGCCTGCTCCACGTGGGGTCTCCAGATAGCTGAGCAGCCAGCA
TCCTATCACTCCTGGGGAGCCAGACCTGTGCTGCTGGGGTTAGGGGACAGCCAAGGGGCC
CAGCCAGGACATGCTGGGTGTCCCAGCCTGCAGGCAGGCTTTGGGAAAGAAATTTATTTT
TGTTTGGATGGACCCACTGGTCCCTCATCAATAAAGGGGCCGGAGTCCAGCCCTGCACAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8C1Q2_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8C1Q2_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               172-291, - strand, RNAz p=0.552844
               

               
               402-595, + strand, RNAz p=0.963944

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               172-291, - strand, RNAz p=0.552844
               

               
               402-595, + strand, RNAz p=0.963944

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_022095, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_022095, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               172-595, gnl|bosTau2|chr13 (54538034-54537605)
               

               
               172-595, gnl|Hg17|chr20 (44011129-44010708)
               

               
               172-595, gnl|Mm7|chr2 (164632948-164632540)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               172-595, gnl|bosTau2|chr13 (54538034-54537605)
               

               
               172-595, gnl|Hg17|chr20 (44011129-44010708)
               

               
               172-595, gnl|Mm7|chr2 (164632948-164632540)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               cly (0.120642)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               cly (0.120642)
               

               
               med (0.116252)

	172-291, - strand, RNAz p=0.552844
	402-595, + strand, RNAz p=0.963944

	172-595, gnl\|bosTau2\|chr13 (54538034-54537605)
	172-595, gnl\|Hg17\|chr20 (44011129-44010708)
	172-595, gnl\|Mm7\|chr2 (164632948-164632540)