Non-Coding RNA Search

Ss1.1-rhyp22c_g6.5

Sequence:


               
               ACCCACCTCCTACCAAGGCTTAATGCCCTTTCAGTCCATCAAATGTGAACTCAGTGGACT
TTGAAATGTTTACAGGGCTGTAAGTCCAATTGTTACGTCTTTACCGTTTGGAAACCTTTT
AAATAAAATGAATGTGGTTTCTATGGGACATGGACCCTTAAAATTGGAACCTGCAAGGAG
GGTTACTGATGAAGTCACAAGTTTTCCCCCCAGGTGTCTTTGATGAAACAAGCCAAAGTA
GTTGTAGAAATCAGTAGACCGTGGCAGATACAGAAATAAATAAATGTCAGGGCCTGTAAT
TTAAAACTCGTAATAAAATCCTTCCGTGCTTGTAATGCTACTAAAACACTGGGAGAAGTC
ACCGCTTCTACCTGAGTCGCTTTGAAATGTTACTTCCACGGCCCTACATCAGGTGTCGTG
TATTGACGGCTGAGACTGAATTCTCAGAAGGGAGGCGTTCCCAGCTCACCCGGACTCCAA
GCTCTGGCCGGACCACGCTGCCCTCGTGCACTTTTATAATAGAGACTAATGGAGGGAGCC
TGTTGGTATCAAATTGTTTACATTTCTTTATATAAATAATGTGCTTTCAGTGCCTTAGTT
ACGGGTCCCTTTCTTTTACTTGTTCCGAGAATTCTGCAAGGTGTCTCTTAGGTAAAAGTC
TCTTTTTGCTATTCACTGGGAGAAAAATGATTTCTAACACACTGGTCACTGTGGTAAATG
CTACTTCGTGATGACACCTGGGGAAGAGAGCTTGCTGCTGAGGTCGTGGCTGCTCAGGGC
TGTTGTTATGCTGTAGGGAACGAAAATGGTCTTGTCACACGATGCGCTTCAGATTAGATA
TGGCCCTAAAGCTGTTTTGTGCTGACCTTACATTCTTATTTCAGGAGAGAATCTTGGTTT
TAGTATTCATATTTTTAAAAGATCATTACGTGCAAAACACTAAGTTTTAAAAATAACTCA
CAGAATGGCCTTAGTTTTCAATGTCCACTGGTATGTTTGTGAGTTGTATTCTCTGTAGTA
TACATCCCAGAATAAAGTGGAGTGAATAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCACCTCCTACCAAGGCTTAATGCCCTTTCAGTCCATCAAATGTGAACTCAGTGGACT
TTGAAATGTTTACAGGGCTGTAAGTCCAATTGTTACGTCTTTACCGTTTGGAAACCTTTT
AAATAAAATGAATGTGGTTTCTATGGGACATGGACCCTTAAAATTGGAACCTGCAAGGAG
GGTTACTGATGAAGTCACAAGTTTTCCCCCCAGGTGTCTTTGATGAAACAAGCCAAAGTA
GTTGTAGAAATCAGTAGACCGTGGCAGATACAGAAATAAATAAATGTCAGGGCCTGTAAT
TTAAAACTCGTAATAAAATCCTTCCGTGCTTGTAATGCTACTAAAACACTGGGAGAAGTC
ACCGCTTCTACCTGAGTCGCTTTGAAATGTTACTTCCACGGCCCTACATCAGGTGTCGTG
TATTGACGGCTGAGACTGAATTCTCAGAAGGGAGGCGTTCCCAGCTCACCCGGACTCCAA
GCTCTGGCCGGACCACGCTGCCCTCGTGCACTTTTATAATAGAGACTAATGGAGGGAGCC
TGTTGGTATCAAATTGTTTACATTTCTTTATATAAATAATGTGCTTTCAGTGCCTTAGTT
ACGGGTCCCTTTCTTTTACTTGTTCCGAGAATTCTGCAAGGTGTCTCTTAGGTAAAAGTC
TCTTTTTGCTATTCACTGGGAGAAAAATGATTTCTAACACACTGGTCACTGTGGTAAATG
CTACTTCGTGATGACACCTGGGGAAGAGAGCTTGCTGCTGAGGTCGTGGCTGCTCAGGGC
TGTTGTTATGCTGTAGGGAACGAAAATGGTCTTGTCACACGATGCGCTTCAGATTAGATA
TGGCCCTAAAGCTGTTTTGTGCTGACCTTACATTCTTATTTCAGGAGAGAATCTTGGTTT
TAGTATTCATATTTTTAAAAGATCATTACGTGCAAAACACTAAGTTTTAAAAATAACTCA
CAGAATGGCCTTAGTTTTCAATGTCCACTGGTATGTTTGTGAGTTGTATTCTCTGTAGTA
TACATCCCAGAATAAAGTGGAGTGAATAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               19-1052, gnl|bosTau2|chr11 (50204884-50203874)
               

               
               19-1052, gnl|Hg17|chr2 (30777699-30778735)
               

               
               19-1052, gnl|Mm7|chr17 (71530753-71531736)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-1052, gnl|bosTau2|chr11 (50204884-50203874)
               

               
               19-1052, gnl|Hg17|chr2 (30777699-30778735)
               

               
               19-1052, gnl|Mm7|chr17 (71530753-71531736)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               pty (0.285429)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.285429)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               eje (0.0988338)

	19-1052, gnl\|bosTau2\|chr11 (50204884-50203874)
	19-1052, gnl\|Hg17\|chr2 (30777699-30778735)
	19-1052, gnl\|Mm7\|chr17 (71530753-71531736)

	pty (0.285429)
	aor (0.195274)
	fbs (0.175346)
	hyp (0.142837)
	lnt (0.142308)
	eje (0.0988338)