Non-Coding RNA Search

Ss1.1-rhyp22c_i20.5

Sequence:


               
               TCGCCCGACCCCGCAGGGCCAGCAGCACCTTTCGGGCCTTGGACCCCCAGCCGGCAGCCC
CCTGCCCCAGCGCCTGCCAAGTCCCACATCAGCGCCCCAGCAGCCTGCATCCCATGCCAC
CCAGCTGACCCAGGGTCAAGGCCGCCAATCCCGGCCAGTGGCGGGAGGACCTGGGGCACC
TCCAGCAGCTCGCCCACCTGCCTCCCCATCTCCCCAGCGCCAGGCGGGCCCACCACAGGC
TACTCGGCAGACATCTGTCTCTGGTCAGGCTCCGCCAAAGGCCTCGGGGGCTCCACCGGG
TTGGTCAGCAGCGCCAGGGCCCACCCCAGAAACCCCCAGGCCCCGCCGGCCCCACACGCC
AGGCCAGCCAGGCGGGTCCCATGCCCCGCACTGGGCCACCCACCACGCAGCAGCCGCGAC
CCAGTGGCCCAGGCCCTGCTGGACGTCCCACCAAGCCACAGCTGGCACAGAAACCTAGCC
AGGACGTGCCACCGCCTGCTGCTGCTGCCGCTGCTGCTGCTGCTGCTGCCGGGGGACCCC
CACACCCCCAGCTCAAAGCCAGCCCCGCCCAGGCCCAGCCTTAGCCAGGACGAGGTGAAA
GCTGAGACCATCCGCAGCCTGAGGAAGTCTTTCGCCAGCCTCTTCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCCCGACCCCGCAGGGCCAGCAGCACCTTTCGGGCCTTGGACCCCCAGCCGGCAGCCC
CCTGCCCCAGCGCCTGCCAAGTCCCACATCAGCGCCCCAGCAGCCTGCATCCCATGCCAC
CCAGCTGACCCAGGGTCAAGGCCGCCAATCCCGGCCAGTGGCGGGAGGACCTGGGGCACC
TCCAGCAGCTCGCCCACCTGCCTCCCCATCTCCCCAGCGCCAGGCGGGCCCACCACAGGC
TACTCGGCAGACATCTGTCTCTGGTCAGGCTCCGCCAAAGGCCTCGGGGGCTCCACCGGG
TTGGTCAGCAGCGCCAGGGCCCACCCCAGAAACCCCCAGGCCCCGCCGGCCCCACACGCC
AGGCCAGCCAGGCGGGTCCCATGCCCCGCACTGGGCCACCCACCACGCAGCAGCCGCGAC
CCAGTGGCCCAGGCCCTGCTGGACGTCCCACCAAGCCACAGCTGGCACAGAAACCTAGCC
AGGACGTGCCACCGCCTGCTGCTGCTGCCGCTGCTGCTGCTGCTGCTGCCGGGGGACCCC
CACACCCCCAGCTCAAAGCCAGCCCCGCCCAGGCCCAGCCTTAGCCAGGACGAGGTGAAA
GCTGAGACCATCCGCAGCCTGAGGAAGTCTTTCGCCAGCCTCTTCTCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-201, - strand, RNAz p=0.733335
               

               
               362-484, - strand, RNAz p=0.959477

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-201, - strand, RNAz p=0.733335
               

               
               362-484, - strand, RNAz p=0.959477

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               357-480, - strand, RNAmicro p=0.991047

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               357-480, - strand, RNAmicro p=0.991047

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-484, gnl|bosTau2|chrX (25484049-25483568)
               

               
               2-484, gnl|Hg17|chrX (47190187-47189709)
               

               
               2-484, gnl|Mm7|chrX (19296184-19295703)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-484, gnl|bosTau2|chrX (25484049-25483568)
               

               
               2-484, gnl|Hg17|chrX (47190187-47189709)
               

               
               2-484, gnl|Mm7|chrX (19296184-19295703)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	2-201, - strand, RNAz p=0.733335
	362-484, - strand, RNAz p=0.959477

	2-484, gnl\|bosTau2\|chrX (25484049-25483568)
	2-484, gnl\|Hg17\|chrX (47190187-47189709)
	2-484, gnl\|Mm7\|chrX (19296184-19295703)