Ss1.1-rhyp22c_n24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAACAACGGCCTTTATTTAAAAAATAAACTTCTGGATCACACAAGAAAGGATCCCTGTG ACTGCACCTCCCCCCCCCCAGACGGGCTTGAGAGGTGGCAGGGTCACAGGCTGGCAAAGT CCCCTTTGTGCTGCTCCAGCCACTGCTCCAGCGTCCTGGCCTTGGGGTTGAGCCTCAGGG TCAGTTCAATGTCGCGGTCGGGTTTCAGGGTATAGAAACGGAACATGTTGGCCAGGTCTT GGGCACCGGGGAAGCCAAGCTTCTCGAAGTCCTCGGGGGTGGTCTTGGCATCACGCACAG TCTTCCTGGTGTGCCTGGAGAGCAGGGCGGCGTACTCCCCCACCGTGTGCCTGCAGGTAC TGAGCCCGATGTTCTGGCCCACGTATTCTTCTGGCATCTTCAGCAGGCTGAGCACCACGG GGCCCAGGTCGGTCACCGACATGCCGTCCATGGGCACATCACCCATGGGCAAGCTCAGCA AGTAGCTCTTTCCGTCCGGGGCCTTCTGGGGCAGGAAGGCCGAGAGGAGGTTCTCGAAAT AGCAGGGCAGCCGCACGCTGGTCATGGGAACACCGATGTCCCGGAAATACTCCTCCACCT CCCCTTTGCCGTCAAAGTGGCCCGCCGCCAGCCTCCCCGCCGTCAGCTTCTTCACGTTCT CCAGGCCGCTGTAGACCACGTAGCGGAGGCCCAGGCGCTTGGCCAGGTCGGCCAGCAGCT TCCCCTGCTTGACCTCCTGCTCCTGGCTGCAGTTCTCCCAGTAGTTGGTCACGATGAAGG CGGCGTGTGCCCCGGTCAAGGCCCCCTCCATGCTGGCCTCGTCATCCTGGTCTCCCTGCA CTACTTCTGCACCTTGCAGCCTCAGCTCCTTCGCCGCCCTCTGCCTAGGGTTCCGGGTCA CCACTCGGACCCTGAACGTCCCATCTTCCAGAAGCGTCTGGGCCACTGAGCCTCCCTGGG CACCAGTGGCTCCAAACACGACCACCAGTTTCCTTTCCGCCATGCGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAACAACGGCCTTTATTTAAAAAATAAACTTCTGGATCACACAAGAAAGGATCCCTGTG ACTGCACCTCCCCCCCCCCAGACGGGCTTGAGAGGTGGCAGGGTCACAGGCTGGCAAAGT CCCCTTTGTGCTGCTCCAGCCACTGCTCCAGCGTCCTGGCCTTGGGGTTGAGCCTCAGGG TCAGTTCAATGTCGCGGTCGGGTTTCAGGGTATAGAAACGGAACATGTTGGCCAGGTCTT GGGCACCGGGGAAGCCAAGCTTCTCGAAGTCCTCGGGGGTGGTCTTGGCATCACGCACAG TCTTCCTGGTGTGCCTGGAGAGCAGGGCGGCGTACTCCCCCACCGTGTGCCTGCAGGTAC TGAGCCCGATGTTCTGGCCCACGTATTCTTCTGGCATCTTCAGCAGGCTGAGCACCACGG GGCCCAGGTCGGTCACCGACATGCCGTCCATGGGCACATCACCCATGGGCAAGCTCAGCA AGTAGCTCTTTCCGTCCGGGGCCTTCTGGGGCAGGAAGGCCGAGAGGAGGTTCTCGAAAT AGCAGGGCAGCCGCACGCTGGTCATGGGAACACCGATGTCCCGGAAATACTCCTCCACCT CCCCTTTGCCGTCAAAGTGGCCCGCCGCCAGCCTCCCCGCCGTCAGCTTCTTCACGTTCT CCAGGCCGCTGTAGACCACGTAGCGGAGGCCCAGGCGCTTGGCCAGGTCGGCCAGCAGCT TCCCCTGCTTGACCTCCTGCTCCTGGCTGCAGTTCTCCCAGTAGTTGGTCACGATGAAGG CGGCGTGTGCCCCGGTCAAGGCCCCCTCCATGCTGGCCTCGTCATCCTGGTCTCCCTGCA CTACTTCTGCACCTTGCAGCCTCAGCTCCTTCGCCGCCCTCTGCCTAGGGTTCCGGGTCA CCACTCGGACCCTGAACGTCCCATCTTCCAGAAGCGTCTGGGCCACTGAGCCTCCCTGGG CACCAGTGGCTCCAAACACGACCACCAGTTTCCTTTCCGCCATGCGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 786-969, - strand, RNAz p=0.926592 | |
| 797-956, - strand, RNAz p=0.989671 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 786-969, - strand, RNAz p=0.926592 | |
| 797-956, - strand, RNAz p=0.989671 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-285, gnl|bosTau2|chr25 (4395091-4395377) | |
| 1-285, gnl|canFam2|chr6 (39969401-39969165) | |
| 1-285, gnl|dasNov1|scaffold_192213 (551-804) | |
| 1-285, gnl|Hg17|chr16 (4451700-4451963) | |
| 1-285, gnl|hg17|chr4 (185579919-185580168) | |
| 1-285, gnl|loxAfr1|scaffold_35840 (31301-31558) | |
| 1-285, gnl|Mm7|chr16 (4383032-4383314) | |
| 1-285, gnl|mm7|chr8 (45719116-45718883) | |
| 1-285, gnl|oryCun1|scaffold_176577 (3667-3903) | |
| 1-285, gnl|panTro1|chr3 (203784624-203784875) | |
| 1-285, gnl|rheMac2|chr5 (176402658-176402909) | |
| 1-285, gnl|rn3|chr16 (48566631-48566855) | |
| 718-969, gnl|bosTau2|chr25 (4400266-4400517) | |
| 718-969, gnl|canFam2|chr6 (39963483-39963299) | |
| 718-969, gnl|dasNov1|scaffold_11386 (1408-1591) | |
| 718-969, gnl|echTel1|scaffold_317230 (14910-14743) | |
| 718-969, gnl|galGal2|chr14 (14573958-14574142) | |
| 718-969, gnl|hg17|chr16 (4459211-4459395) | |
| 718-969, gnl|Hg17|chr16 (4459222-4459473) | |
| 718-969, gnl|mm7|chr16 (4387992-4388172) | |
| 718-969, gnl|Mm7|chr16 (4388005-4388250) | |
| 718-969, gnl|monDom2|scaffold_49 (4269954-4269770) | |
| 718-969, gnl|oryCun1|scaffold_171812 (8753-8935) | |
| 718-969, gnl|panTro1|chr18 (4338515-4338699) | |
| 718-969, gnl|rheMac2|chr20 (4628296-4628480) | |
| 718-969, gnl|rn3|chr10 (10974929-10974748) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-285, gnl|bosTau2|chr25 (4395091-4395377) | |
| 1-285, gnl|canFam2|chr6 (39969401-39969165) | |
| 1-285, gnl|dasNov1|scaffold_192213 (551-804) | |
| 1-285, gnl|Hg17|chr16 (4451700-4451963) | |
| 1-285, gnl|hg17|chr4 (185579919-185580168) | |
| 1-285, gnl|loxAfr1|scaffold_35840 (31301-31558) | |
| 1-285, gnl|Mm7|chr16 (4383032-4383314) | |
| 1-285, gnl|mm7|chr8 (45719116-45718883) | |
| 1-285, gnl|oryCun1|scaffold_176577 (3667-3903) | |
| 1-285, gnl|panTro1|chr3 (203784624-203784875) | |
| 1-285, gnl|rheMac2|chr5 (176402658-176402909) | |
| 1-285, gnl|rn3|chr16 (48566631-48566855) | |
| 718-969, gnl|bosTau2|chr25 (4400266-4400517) | |
| 718-969, gnl|canFam2|chr6 (39963483-39963299) | |
| 718-969, gnl|dasNov1|scaffold_11386 (1408-1591) | |
| 718-969, gnl|echTel1|scaffold_317230 (14910-14743) | |
| 718-969, gnl|galGal2|chr14 (14573958-14574142) | |
| 718-969, gnl|hg17|chr16 (4459211-4459395) | |
| 718-969, gnl|Hg17|chr16 (4459222-4459473) | |
| 718-969, gnl|mm7|chr16 (4387992-4388172) | |
| 718-969, gnl|Mm7|chr16 (4388005-4388250) | |
| 718-969, gnl|monDom2|scaffold_49 (4269954-4269770) | |
| 718-969, gnl|oryCun1|scaffold_171812 (8753-8935) | |
| 718-969, gnl|panTro1|chr18 (4338515-4338699) | |
| 718-969, gnl|rheMac2|chr20 (4628296-4628480) | |
| 718-969, gnl|rn3|chr10 (10974929-10974748) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| hlv (0.278513) | |
| tes (0.207814) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| jca (0.11396) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.278513) | |
| tes (0.207814) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| jca (0.11396) |