Ss1.1-rhyp23c_f15.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GCCACGGCCACTCCACCACGGCTGGCACTGTCAGTGGGCAGCACCGGCTGAGCCCGCACT GAAGTCCCTGCTGGGACAGTTCTTCCAGAATGTTCTTCAGAGGGGATCTCCAGCTCCCTG GTACCCTCAGGGGCCCGTGTGGCTGGAAGCATGGAAGAGGCATCCTCGGAGCTCCCTGTC TCTTCACTCTCTCCTCGAGGGACCCCAGACAGCTCAGGACCCCCAGTATCCACCCCTATG TCTCTTGCCCCAACCAGAGTGGAAGATGGTGGGGATGCCAGGTTCCCCTCCCTGGGAGTG GGCGGGGTCTCCGTGGGTGGTCCAAGGACCCTTGGAGGCCTGGGAGCCTCTGGCTCTCCA TAAGGAGGTGATGATGCACCAGGCTGTAGGACTGCCCTTGCTGGTGGGGATGCCTGGGAG AGTGACTCCTCTGGAGCTGACTCGGTGGGGAGAGTGGCTTCTGGGTGCAGACTGCCAGGC TCGCTGGGCCAGGCCCACAGGGCCTTATCCTCCACCTCCTCCTCTTCTTCTTCTTCCTCG AATTTCTCTTCTTCCTCCAACACTTGGCTTTCCTCTTCTGAGGACCCCAGGGGGGTTACA ATGGATGGGGTTTCAAACTCTAGAAGGGTCCTCGGGGCCTCTGCCGGGTCTTCTGGAGTG GAGCTTCCACCTCCTCCATCTTCCATGATAGGAATGGAGTAGATGGCTCCTCGGGACTCA CTCTCCACAGCTTCCTGAGGCAGCTGCAGCTCCTCCAGGGTCTCTGTCACTGTGACAATT GCTTCCAGTGCATCAGAGGCCAGATCAGAGGCTGGGTTGGAGGCCTCAGGGATGGCAGAG GGCTGAGTAGAGTCTCGGAAGCAGTAGACGTTGAAGCGGCTGTGCTTGTTGGGGAAGCCC GTCTGGTTGGGAAAGAGGAAAAGAGTCTTGACACCAGGGAGGCCCCCACCACAGCGCTGG CTGGGTGTGACGATGGGGTAGCGCACACTGCCATCAGCCAGCCAGCCTGGGCTGCAGCGG TCCAGGCCACCA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GCCACGGCCACTCCACCACGGCTGGCACTGTCAGTGGGCAGCACCGGCTGAGCCCGCACT GAAGTCCCTGCTGGGACAGTTCTTCCAGAATGTTCTTCAGAGGGGATCTCCAGCTCCCTG GTACCCTCAGGGGCCCGTGTGGCTGGAAGCATGGAAGAGGCATCCTCGGAGCTCCCTGTC TCTTCACTCTCTCCTCGAGGGACCCCAGACAGCTCAGGACCCCCAGTATCCACCCCTATG TCTCTTGCCCCAACCAGAGTGGAAGATGGTGGGGATGCCAGGTTCCCCTCCCTGGGAGTG GGCGGGGTCTCCGTGGGTGGTCCAAGGACCCTTGGAGGCCTGGGAGCCTCTGGCTCTCCA TAAGGAGGTGATGATGCACCAGGCTGTAGGACTGCCCTTGCTGGTGGGGATGCCTGGGAG AGTGACTCCTCTGGAGCTGACTCGGTGGGGAGAGTGGCTTCTGGGTGCAGACTGCCAGGC TCGCTGGGCCAGGCCCACAGGGCCTTATCCTCCACCTCCTCCTCTTCTTCTTCTTCCTCG AATTTCTCTTCTTCCTCCAACACTTGGCTTTCCTCTTCTGAGGACCCCAGGGGGGTTACA ATGGATGGGGTTTCAAACTCTAGAAGGGTCCTCGGGGCCTCTGCCGGGTCTTCTGGAGTG GAGCTTCCACCTCCTCCATCTTCCATGATAGGAATGGAGTAGATGGCTCCTCGGGACTCA CTCTCCACAGCTTCCTGAGGCAGCTGCAGCTCCTCCAGGGTCTCTGTCACTGTGACAATT GCTTCCAGTGCATCAGAGGCCAGATCAGAGGCTGGGTTGGAGGCCTCAGGGATGGCAGAG GGCTGAGTAGAGTCTCGGAAGCAGTAGACGTTGAAGCGGCTGTGCTTGTTGGGGAAGCCC GTCTGGTTGGGAAAGAGGAAAAGAGTCTTGACACCAGGGAGGCCCCCACCACAGCGCTGG CTGGGTGTGACGATGGGGTAGCGCACACTGCCATCAGCCAGCCAGCCTGGGCTGCAGCGG TCCAGGCCACCA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
1-193, - strand, RNAz p=0.645799 | |
274-623, + strand, RNAz p=0.998887 |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
1-193, - strand, RNAz p=0.645799 | |
274-623, + strand, RNAz p=0.998887 |
Aligned organism(s): 22 entry(ies) | More info |
Aligned organism(s): 22 entry(ies) | Help | Less info |
1-623, gnl|bosTau2|chr3 (10991723-10991083) | |
1-623, gnl|Hg17|chr1 (153435746-153435109) | |
1-623, gnl|Mm7|chr3 (88106867-88107447) | |
854-1030, gnl|bosTau2|chr21 (14863998-14864174) | |
854-1030, gnl|canFam2|chr3 (54870429-54870663) | |
854-1030, gnl|danRer3|chr25 (11802672-11802438) | |
854-1030, gnl|dasNov1|scaffold_296189 (320-81) | |
854-1030, gnl|echTel1|scaffold_274256 (5652-5886) | |
854-1030, gnl|fr1|chrUn (111144765-111144999) | |
854-1030, gnl|galGal2|chr10 (13624333-13624099) | |
854-1030, gnl|hg17|chr15 (87193736-87193970) | |
854-1030, gnl|Hg17|chr15 (87193966-87193790) | |
854-1030, gnl|loxAfr1|scaffold_6467 (35192-35426) | |
854-1030, gnl|mm7|chr7 (74957247-74957481) | |
854-1030, gnl|Mm7|chr7 (74957477-74957301) | |
854-1030, gnl|monDom2|scaffold_45 (11659660-11659426) | |
854-1030, gnl|oryCun1|scaffold_200865 (7400-7166) | |
854-1030, gnl|panTro1|chr16 (88048965-88049199) | |
854-1030, gnl|rheMac2|chr7 (68460196-68460430) | |
854-1030, gnl|rn3|chr1 (134907219-134907453) | |
854-1030, gnl|tetNig1|chrUn_random (25864470-25864236) | |
854-1030, gnl|xenTro1|scaffold_130 (1578035-1577801) |
Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-623, gnl|bosTau2|chr3 (10991723-10991083) | |
1-623, gnl|Hg17|chr1 (153435746-153435109) | |
1-623, gnl|Mm7|chr3 (88106867-88107447) | |
854-1030, gnl|bosTau2|chr21 (14863998-14864174) | |
854-1030, gnl|canFam2|chr3 (54870429-54870663) | |
854-1030, gnl|danRer3|chr25 (11802672-11802438) | |
854-1030, gnl|dasNov1|scaffold_296189 (320-81) | |
854-1030, gnl|echTel1|scaffold_274256 (5652-5886) | |
854-1030, gnl|fr1|chrUn (111144765-111144999) | |
854-1030, gnl|galGal2|chr10 (13624333-13624099) | |
854-1030, gnl|hg17|chr15 (87193736-87193970) | |
854-1030, gnl|Hg17|chr15 (87193966-87193790) | |
854-1030, gnl|loxAfr1|scaffold_6467 (35192-35426) | |
854-1030, gnl|mm7|chr7 (74957247-74957481) | |
854-1030, gnl|Mm7|chr7 (74957477-74957301) | |
854-1030, gnl|monDom2|scaffold_45 (11659660-11659426) | |
854-1030, gnl|oryCun1|scaffold_200865 (7400-7166) | |
854-1030, gnl|panTro1|chr16 (88048965-88049199) | |
854-1030, gnl|rheMac2|chr7 (68460196-68460430) | |
854-1030, gnl|rn3|chr1 (134907219-134907453) | |
854-1030, gnl|tetNig1|chrUn_random (25864470-25864236) | |
854-1030, gnl|xenTro1|scaffold_130 (1578035-1577801) |
Expressed library(ies): 1 entry(ies) | More info |
Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
hyp (0.285673) |