Ss1.1-rhyp23c_p7.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CTTCCTCATCCCGATCCCGGTCCAGGTCCCTCTCCCCCCCACACAAGAGGTGGCGAAGGT CCAGTTGCAGTTCCTCTGGACGTTCCCGAAGATGCTCTTCCTCTTCTTCATCATCATCTT CCTCGTCTTCCTCATCCTCATCATCTAGTTCCCGAAGCCGGTCCCGTTCTCCATCCCCCC GCCGGAGAAGTGACAGGAGGCGGCGGTACAGTTCTTACCGTTCACATGACCATTACCAAA GGCAGAGAGTTCTGCAGAAGGAACGTGCAATAGAAGAGAGAAGAGTGGTCTTCATTGGGA AGATACCTGGCCGCATGACTCGGTCAGAGTTGAAACAGAGGTTCTCTGTTTTTGGAGAGA TTGAGGAGTGCACCATCCACTTCCGTGTCCAAGGTGACAACTATGGCTTCGTCACTTACC GCTATGCCGAGGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGCTGAGGCAGGCCGATG AGCAGCCCTTTGATCTCTGCTTTGGGGGCCGCAGGCAGTTCTGCAAGAGAAGCTATTCTG ATCTTGACTCCAACCGGGAAGACTTTGACCCTGCTCCTGTAAAGAGCAAATTTGATTCTC TTGACTTTGACACATTGTTGAAACAGGCCCAGAAGAACCTCAGGAGGTAACCCTGGGCCC TTCTCCCCAACTCCCTTTTCTTTGGAGGTGCCCAACCTCCTCCATCCCCCTCCCCTAGTC TAGGGGAGAGAGCTGCTAGTGAGATGACTGTTTTATAAAGAAATGGAAAAAAGTGAAATA AAAATGTGTTAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CTTCCTCATCCCGATCCCGGTCCAGGTCCCTCTCCCCCCCACACAAGAGGTGGCGAAGGT CCAGTTGCAGTTCCTCTGGACGTTCCCGAAGATGCTCTTCCTCTTCTTCATCATCATCTT CCTCGTCTTCCTCATCCTCATCATCTAGTTCCCGAAGCCGGTCCCGTTCTCCATCCCCCC GCCGGAGAAGTGACAGGAGGCGGCGGTACAGTTCTTACCGTTCACATGACCATTACCAAA GGCAGAGAGTTCTGCAGAAGGAACGTGCAATAGAAGAGAGAAGAGTGGTCTTCATTGGGA AGATACCTGGCCGCATGACTCGGTCAGAGTTGAAACAGAGGTTCTCTGTTTTTGGAGAGA TTGAGGAGTGCACCATCCACTTCCGTGTCCAAGGTGACAACTATGGCTTCGTCACTTACC GCTATGCCGAGGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGCTGAGGCAGGCCGATG AGCAGCCCTTTGATCTCTGCTTTGGGGGCCGCAGGCAGTTCTGCAAGAGAAGCTATTCTG ATCTTGACTCCAACCGGGAAGACTTTGACCCTGCTCCTGTAAAGAGCAAATTTGATTCTC TTGACTTTGACACATTGTTGAAACAGGCCCAGAAGAACCTCAGGAGGTAACCCTGGGCCC TTCTCCCCAACTCCCTTTTCTTTGGAGGTGCCCAACCTCCTCCATCCCCCTCCCCTAGTC TAGGGGAGAGAGCTGCTAGTGAGATGACTGTTTTATAAAGAAATGGAAAAAAGTGAAATA AAAATGTGTTAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 3 entry(ies) | More info |
Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
273-394, + strand, RNAz p=0.907284 | |
273-394, + strand, RNAz p=0.691104 | |
546-787, - strand, RNAz p=0.996067 |
Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
273-394, + strand, RNAz p=0.907284 | |
273-394, + strand, RNAz p=0.691104 | |
546-787, - strand, RNAz p=0.996067 |
Aligned organism(s): 25 entry(ies) | More info |
Aligned organism(s): 25 entry(ies) | Help | Less info |
57-207, gnl|bosTau2|chr26 (15309309-15309462) | |
57-207, gnl|Hg17|chr10 (103898117-103898270) | |
57-207, gnl|Mm7|chr19 (45967909-45968047) | |
273-394, gnl|bosTau2|chr26 (15309759-15309880) | |
273-394, gnl|canFam2|chr28 (17683850-17683945) | |
273-394, gnl|danRer3|chr1 (38833007-38832912) | |
273-394, gnl|dasNov1|scaffold_105830 (8167-8262) | |
273-394, gnl|echTel1|scaffold_294327 (28577-28668) | |
273-394, gnl|fr1|chrUn (16256776-16256871) | |
273-394, gnl|galGal2|chr6 (21622483-21622392) | |
273-394, gnl|hg17|chr10 (103898562-103898657) | |
273-394, gnl|Hg17|chr10 (103898564-103898685) | |
273-394, gnl|loxAfr1|scaffold_12349 (31249-31344) | |
273-394, gnl|mm7|chr19 (45968334-45968429) | |
273-394, gnl|Mm7|chr19 (45968336-45968457) | |
273-394, gnl|monDom2|scaffold_14 (61279960-61279865) | |
273-394, gnl|oryCun1|scaffold_209820 (39344-39439) | |
273-394, gnl|panTro1|chr8 (105658874-105658969) | |
273-394, gnl|rheMac2|chr9 (101806905-101807000) | |
273-394, gnl|rn3|chr1 (251553918-251554013) | |
273-394, gnl|tetNig1|chrUn_random (27341426-27341331) | |
273-394, gnl|xenTro1|scaffold_1153 (9907-9812) | |
546-787, gnl|bosTau2|chr26 (15310565-15310809) | |
546-787, gnl|Hg17|chr10 (103899672-103899916) | |
546-787, gnl|Mm7|chr19 (45969182-45969426) |
Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
57-207, gnl|bosTau2|chr26 (15309309-15309462) | |
57-207, gnl|Hg17|chr10 (103898117-103898270) | |
57-207, gnl|Mm7|chr19 (45967909-45968047) | |
273-394, gnl|bosTau2|chr26 (15309759-15309880) | |
273-394, gnl|canFam2|chr28 (17683850-17683945) | |
273-394, gnl|danRer3|chr1 (38833007-38832912) | |
273-394, gnl|dasNov1|scaffold_105830 (8167-8262) | |
273-394, gnl|echTel1|scaffold_294327 (28577-28668) | |
273-394, gnl|fr1|chrUn (16256776-16256871) | |
273-394, gnl|galGal2|chr6 (21622483-21622392) | |
273-394, gnl|hg17|chr10 (103898562-103898657) | |
273-394, gnl|Hg17|chr10 (103898564-103898685) | |
273-394, gnl|loxAfr1|scaffold_12349 (31249-31344) | |
273-394, gnl|mm7|chr19 (45968334-45968429) | |
273-394, gnl|Mm7|chr19 (45968336-45968457) | |
273-394, gnl|monDom2|scaffold_14 (61279960-61279865) | |
273-394, gnl|oryCun1|scaffold_209820 (39344-39439) | |
273-394, gnl|panTro1|chr8 (105658874-105658969) | |
273-394, gnl|rheMac2|chr9 (101806905-101807000) | |
273-394, gnl|rn3|chr1 (251553918-251554013) | |
273-394, gnl|tetNig1|chrUn_random (27341426-27341331) | |
273-394, gnl|xenTro1|scaffold_1153 (9907-9812) | |
546-787, gnl|bosTau2|chr26 (15310565-15310809) | |
546-787, gnl|Hg17|chr10 (103899672-103899916) | |
546-787, gnl|Mm7|chr19 (45969182-45969426) |
Expressed library(ies): 7 entry(ies) | More info |
Expressed library(ies): 7 entry(ies) | Help | Less info |
nbm (0.198649) | |
duo (0.172801) | |
hyp (0.142837) | |
nca (0.136874) | |
eep (0.122564) | |
cty (0.10408) | |
eje (0.0988338) |
Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
nbm (0.198649) | |
duo (0.172801) | |
hyp (0.142837) | |
nca (0.136874) | |
eep (0.122564) | |
cty (0.10408) | |
eje (0.0988338) |