Non-Coding RNA Search

Ss1.1-rhyp24c_l1.5

Sequence:


               
               CAACACGATCAACAAGCTGCAGACGGACATGAAGACCACTAACTTGGAGGAGATGCGGAT
CGCCATGGAGACCTACTACGAGGAGATTCATCGTCTCCAGACTCTCCTGGCGAGTTCAGA
AACGACAGGAAAGAAGCCCCCAGTGGAGAAGAAAATCGGCCTTAAAAGGCAGAAAAAAAT
GAGCAGTGCCCTCCTGAGCTTGTCCCGGAGTGTCCAGGAGCTCACGGAGGAGAACCAGAG
CCTCAAGGAGGACCTGGACCGCGTGCTGAGCAACTCCCCCACCTTCTCCAAGATAAAGGG
CTACGTGGAGTGGAGCAAGCCGCGGCTGCTTCGGCGGATCGCAGAGCTGGAAAAAAAAAT
AAGTTCGATGGAAAGCCCCACATGCCACGCTTCCGAGGGGGCCAGTTCAACGCCCCCGGC
TTACTCGGCGTGCAGCTCCGCGGTGCAGCGGCAGCCCAGACCGGACCGCCAGGAGGAGAG
CGAGCGTCTTCGGGGGGCGGTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACACGATCAACAAGCTGCAGACGGACATGAAGACCACTAACTTGGAGGAGATGCGGAT
CGCCATGGAGACCTACTACGAGGAGATTCATCGTCTCCAGACTCTCCTGGCGAGTTCAGA
AACGACAGGAAAGAAGCCCCCAGTGGAGAAGAAAATCGGCCTTAAAAGGCAGAAAAAAAT
GAGCAGTGCCCTCCTGAGCTTGTCCCGGAGTGTCCAGGAGCTCACGGAGGAGAACCAGAG
CCTCAAGGAGGACCTGGACCGCGTGCTGAGCAACTCCCCCACCTTCTCCAAGATAAAGGG
CTACGTGGAGTGGAGCAAGCCGCGGCTGCTTCGGCGGATCGCAGAGCTGGAAAAAAAAAT
AAGTTCGATGGAAAGCCCCACATGCCACGCTTCCGAGGGGGCCAGTTCAACGCCCCCGGC
TTACTCGGCGTGCAGCTCCGCGGTGCAGCGGCAGCCCAGACCGGACCGCCAGGAGGAGAG
CGAGCGTCTTCGGGGGGCGGTGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               136-254, - strand, RNAz p=0.57358

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               136-254, - strand, RNAz p=0.57358

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               136-307, gnl|bosTau2|chr25 (39007820-39007990)
               

               
               136-307, gnl|canFam2|chr6 (17565294-17565506)
               

               
               136-307, gnl|hg17|chr7 (2399080-2399280)
               

               
               136-307, gnl|Hg17|chr7 (2399083-2399253)
               

               
               136-307, gnl|loxAfr1|scaffold_29439 (8727-8523)
               

               
               136-307, gnl|mm7|chr5 (139654502-139654302)
               

               
               136-307, gnl|Mm7|chr5 (139654497-139654327)
               

               
               136-307, gnl|oryCun1|scaffold_78274 (708-516)
               

               
               136-307, gnl|panTro1|chr6 (2603492-2603692)
               

               
               136-307, gnl|rheMac2|chr3 (40631839-40631639)
               

               
               136-307, gnl|rn3|chr12 (14463381-14463585)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               136-307, gnl|bosTau2|chr25 (39007820-39007990)
               

               
               136-307, gnl|canFam2|chr6 (17565294-17565506)
               

               
               136-307, gnl|hg17|chr7 (2399080-2399280)
               

               
               136-307, gnl|Hg17|chr7 (2399083-2399253)
               

               
               136-307, gnl|loxAfr1|scaffold_29439 (8727-8523)
               

               
               136-307, gnl|mm7|chr5 (139654502-139654302)
               

               
               136-307, gnl|Mm7|chr5 (139654497-139654327)
               

               
               136-307, gnl|oryCun1|scaffold_78274 (708-516)
               

               
               136-307, gnl|panTro1|chr6 (2603492-2603692)
               

               
               136-307, gnl|rheMac2|chr3 (40631839-40631639)
               

               
               136-307, gnl|rn3|chr12 (14463381-14463585)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               elu (0.385356)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               hyp (0.142837)

	136-307, gnl\|bosTau2\|chr25 (39007820-39007990)
	136-307, gnl\|canFam2\|chr6 (17565294-17565506)
	136-307, gnl\|hg17\|chr7 (2399080-2399280)
	136-307, gnl\|Hg17\|chr7 (2399083-2399253)
	136-307, gnl\|loxAfr1\|scaffold_29439 (8727-8523)
	136-307, gnl\|mm7\|chr5 (139654502-139654302)
	136-307, gnl\|Mm7\|chr5 (139654497-139654327)
	136-307, gnl\|oryCun1\|scaffold_78274 (708-516)
	136-307, gnl\|panTro1\|chr6 (2603492-2603692)
	136-307, gnl\|rheMac2\|chr3 (40631839-40631639)
	136-307, gnl\|rn3\|chr12 (14463381-14463585)