Non-Coding RNA Search

Ss1.1-rhyp25c_k18.5

Sequence:


               
               CTGGATGCTCCAGGGCAAGCTTGGTGGGGCTGGGGGTGTGGGGGGCAGAGCCAGACGTGG
GGCCTCGGGCTCCACCCCCTACCTCTGACCCACCCCTGGGCAAGGAAGACCTGCAGGCTG
TAGCTACCTCCACTGACAGACGAGGGCCAGCACAGAACATCGAGTCCTGGCCCCGCTCCC
AGATGGAGAGGCTGCCTCGTAGAGGACCTGCTGTTTTCCCCTGGAGGAAAATGTGTGCAG
TGACTGTGGTCCCCGACTTCCACACCCTCATCTACCTTCTCCTCCCTTCCACGTCCCTCC
CTCCTCCCCAGAGACCCTCGGAAGGGAAGATGGAGCCGGCCAGATGGGGAGACAGGACTG
GGCTTGTCTGTGTGCACACGTGTGTGCCCTCAGACACGCCGCAAGTGCGAGGCAGCCCCC
AGACCCGGGGGAGGCTCCAGCCCCAGTCACGTGGTGTTAGCGTTACCTTGGTAACTGGCC
TTTCTGGTTCAGAGTAAATCGGGGAGCAAAGCCCCTGGGATTTGTCAAGAAACGCACTGT
ACGTGAAATGCTTTTGCCATCCTGTACGACAGATTTTTTTTTTAAGTTCCAAAATTATGA
TGGGTTTTTTTTTTTTTTTTTTTGGATTTGCTTTACGAATAAACCTGATTGGTCCATTTA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGATGCTCCAGGGCAAGCTTGGTGGGGCTGGGGGTGTGGGGGGCAGAGCCAGACGTGG
GGCCTCGGGCTCCACCCCCTACCTCTGACCCACCCCTGGGCAAGGAAGACCTGCAGGCTG
TAGCTACCTCCACTGACAGACGAGGGCCAGCACAGAACATCGAGTCCTGGCCCCGCTCCC
AGATGGAGAGGCTGCCTCGTAGAGGACCTGCTGTTTTCCCCTGGAGGAAAATGTGTGCAG
TGACTGTGGTCCCCGACTTCCACACCCTCATCTACCTTCTCCTCCCTTCCACGTCCCTCC
CTCCTCCCCAGAGACCCTCGGAAGGGAAGATGGAGCCGGCCAGATGGGGAGACAGGACTG
GGCTTGTCTGTGTGCACACGTGTGTGCCCTCAGACACGCCGCAAGTGCGAGGCAGCCCCC
AGACCCGGGGGAGGCTCCAGCCCCAGTCACGTGGTGTTAGCGTTACCTTGGTAACTGGCC
TTTCTGGTTCAGAGTAAATCGGGGAGCAAAGCCCCTGGGATTTGTCAAGAAACGCACTGT
ACGTGAAATGCTTTTGCCATCCTGTACGACAGATTTTTTTTTTAAGTTCCAAAATTATGA
TGGGTTTTTTTTTTTTTTTTTTTGGATTTGCTTTACGAATAAACCTGATTGGTCCATTTA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               88-240, - strand, RNAz p=0.915609

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               88-240, - strand, RNAz p=0.915609

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               106-223, - strand, RNAmicro p=0.998889

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               106-223, - strand, RNAmicro p=0.998889

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               88-659, gnl|bosTau2|chr15 (19608493-19607940)
               

               
               88-659, gnl|Hg17|chr11 (17755389-17755944)
               

               
               88-659, gnl|Mm7|chr7 (42609013-42609552)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               88-659, gnl|bosTau2|chr15 (19608493-19607940)
               

               
               88-659, gnl|Hg17|chr11 (17755389-17755944)
               

               
               88-659, gnl|Mm7|chr7 (42609013-42609552)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               cov (0.132153)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               cov (0.132153)

	88-659, gnl\|bosTau2\|chr15 (19608493-19607940)
	88-659, gnl\|Hg17\|chr11 (17755389-17755944)
	88-659, gnl\|Mm7\|chr7 (42609013-42609552)