Non-Coding RNA Search

Ss1.1-rhyp26c_c20.5

Sequence:


               
               ATTCCTTCCACTCCCCACCCCCACCCTCACCCGCACACTGTGCTATCAACCAAGGCACAA
ACCTAGCTCAAAATCTTTAAATCTACCGCTAGACACCCCAGAAATCCATTATGGACACAG
GTAGATATGTTTTCCGTAAACACACCAGGGCACAGAAAACACAGCTCATGAGACTTCAAG
TTCTCCAGGCACTGAAGACACAGCCCCTCCAGGTTTGGTGGAGCAAACAGGATTAAACAA
ACACGCTAACAAGGGGGAGTCGTGAGTCTTCTGACAGTAAGAGGGAAGGTAACAAGGGAG
GTAGGTAGGTTAGGAGTACAATTCTTGGCAAGAGTGCAGAGCCCTGAACATAATGGCATG
TCCAAAGAATTAAAAGGAAGTTCATTTGGGCTGGGGTGTGGGCAGATCATGAAGGCTCTC
CAAGCTCAGGAACTTGCTGGGTAAGGGGGAGCTGTGAGCTTCATGGAGAGAAGTGTCATG
GTGAATATATTGCCTGTGTTAGTACCCGAACCCCAAACTCTCCCTGGGTTTAGCCCCATC
CTTCCCATGACCAGATTTCTGGGTCCCTTGTTCCTTCAGTGCTCAGAAAGTACCTGTTTT
CCGTGTCAGGGTGCCTGGAACAGCAGTTGAGCTGAAACTGGAGTCCCACTGCTGGGGGTG
GGTGAGCTCTGTTTGGGACTTCCATCAAGAAATGCATTTCTGTTCTCCAGGAACTTGGCT
CCCTGTCGTAGCTGCGGTTGTCACCATCTCAGGCTTTGTCTCTTCCTTCGGTGGGGGAGA
TGGCAGTGTTCACCTCTGAGGCCTGACCCACCTTTGTCTCAGTCTGGGAGGCCCCAGTGT
GCCTCCCTGCAGGTGGCCTGGCAGTCTCCCCATCTGGTTCCCTTCCAGTCTTCTCCCCCA
TCCTGTCCCAATCACCAGTAGAAATGCTAACATCCCTGCCCAGTAGCCAGAGTAGCCTGC
TAAAGTTCCCTTCTAGATAGGGCCTCCAGTTGCCCTGCGGCGGAGACTAATAAAGGTGCT
GTTGGCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCCTTCCACTCCCCACCCCCACCCTCACCCGCACACTGTGCTATCAACCAAGGCACAA
ACCTAGCTCAAAATCTTTAAATCTACCGCTAGACACCCCAGAAATCCATTATGGACACAG
GTAGATATGTTTTCCGTAAACACACCAGGGCACAGAAAACACAGCTCATGAGACTTCAAG
TTCTCCAGGCACTGAAGACACAGCCCCTCCAGGTTTGGTGGAGCAAACAGGATTAAACAA
ACACGCTAACAAGGGGGAGTCGTGAGTCTTCTGACAGTAAGAGGGAAGGTAACAAGGGAG
GTAGGTAGGTTAGGAGTACAATTCTTGGCAAGAGTGCAGAGCCCTGAACATAATGGCATG
TCCAAAGAATTAAAAGGAAGTTCATTTGGGCTGGGGTGTGGGCAGATCATGAAGGCTCTC
CAAGCTCAGGAACTTGCTGGGTAAGGGGGAGCTGTGAGCTTCATGGAGAGAAGTGTCATG
GTGAATATATTGCCTGTGTTAGTACCCGAACCCCAAACTCTCCCTGGGTTTAGCCCCATC
CTTCCCATGACCAGATTTCTGGGTCCCTTGTTCCTTCAGTGCTCAGAAAGTACCTGTTTT
CCGTGTCAGGGTGCCTGGAACAGCAGTTGAGCTGAAACTGGAGTCCCACTGCTGGGGGTG
GGTGAGCTCTGTTTGGGACTTCCATCAAGAAATGCATTTCTGTTCTCCAGGAACTTGGCT
CCCTGTCGTAGCTGCGGTTGTCACCATCTCAGGCTTTGTCTCTTCCTTCGGTGGGGGAGA
TGGCAGTGTTCACCTCTGAGGCCTGACCCACCTTTGTCTCAGTCTGGGAGGCCCCAGTGT
GCCTCCCTGCAGGTGGCCTGGCAGTCTCCCCATCTGGTTCCCTTCCAGTCTTCTCCCCCA
TCCTGTCCCAATCACCAGTAGAAATGCTAACATCCCTGCCCAGTAGCCAGAGTAGCCTGC
TAAAGTTCCCTTCTAGATAGGGCCTCCAGTTGCCCTGCGGCGGAGACTAATAAAGGTGCT
GTTGGCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               570-681, - strand, RNAz p=0.845258
               

               
               758-913, - strand, RNAz p=0.937724
               

               
               792-1030, - strand, RNAz p=0.952134

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               570-681, - strand, RNAz p=0.845258
               

               
               758-913, - strand, RNAz p=0.937724
               

               
               792-1030, - strand, RNAz p=0.952134

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               3-202, gnl|bosTau2|chr15 (41952708-41952905)
               

               
               3-202, gnl|Hg17|chr11 (73050357-73050633)
               

               
               3-202, gnl|Mm7|chr7 (96691091-96690866)
               


               
               207-1030, gnl|bosTau2|chr15 (41952931-41953771)
               

               
               207-1030, gnl|canFam2|chr21 (27595890-27595034)
               

               
               207-1030, gnl|dasNov1|scaffold_25154 (645-1583)
               

               
               207-1030, gnl|hg17|chr11 (73050506-73051424)
               

               
               207-1030, gnl|Hg17|chr11 (73050669-73051505)
               

               
               207-1030, gnl|loxAfr1|scaffold_2686 (98474-97623)
               

               
               207-1030, gnl|mm7|chr7 (96690972-96690227)
               

               
               207-1030, gnl|Mm7|chr7 (96690862-96690145)
               

               
               207-1030, gnl|oryCun1|scaffold_191847 (3495-4364)
               

               
               207-1030, gnl|panTro1|chr9 (74331213-74332129)
               

               
               207-1030, gnl|rheMac2|chr14 (71802364-71803251)
               

               
               207-1030, gnl|rn3|chr1 (158161750-158160999)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-202, gnl|bosTau2|chr15 (41952708-41952905)
               

               
               3-202, gnl|Hg17|chr11 (73050357-73050633)
               

               
               3-202, gnl|Mm7|chr7 (96691091-96690866)
               


               
               207-1030, gnl|bosTau2|chr15 (41952931-41953771)
               

               
               207-1030, gnl|canFam2|chr21 (27595890-27595034)
               

               
               207-1030, gnl|dasNov1|scaffold_25154 (645-1583)
               

               
               207-1030, gnl|hg17|chr11 (73050506-73051424)
               

               
               207-1030, gnl|Hg17|chr11 (73050669-73051505)
               

               
               207-1030, gnl|loxAfr1|scaffold_2686 (98474-97623)
               

               
               207-1030, gnl|mm7|chr7 (96690972-96690227)
               

               
               207-1030, gnl|Mm7|chr7 (96690862-96690145)
               

               
               207-1030, gnl|oryCun1|scaffold_191847 (3495-4364)
               

               
               207-1030, gnl|panTro1|chr9 (74331213-74332129)
               

               
               207-1030, gnl|rheMac2|chr14 (71802364-71803251)
               

               
               207-1030, gnl|rn3|chr1 (158161750-158160999)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               hyp (1.28553)
               

               
               fbs (0.526039)
               

               
               eye (0.511509)
               

               
               fhi (0.169578)
               

               
               nmm (0.132802)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (1.28553)
               

               
               fbs (0.526039)
               

               
               eye (0.511509)
               

               
               fhi (0.169578)
               

               
               nmm (0.132802)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	570-681, - strand, RNAz p=0.845258
	758-913, - strand, RNAz p=0.937724
	792-1030, - strand, RNAz p=0.952134

	3-202, gnl\|bosTau2\|chr15 (41952708-41952905)
	3-202, gnl\|Hg17\|chr11 (73050357-73050633)
	3-202, gnl\|Mm7\|chr7 (96691091-96690866)

	207-1030, gnl\|bosTau2\|chr15 (41952931-41953771)
	207-1030, gnl\|canFam2\|chr21 (27595890-27595034)
	207-1030, gnl\|dasNov1\|scaffold_25154 (645-1583)
	207-1030, gnl\|hg17\|chr11 (73050506-73051424)
	207-1030, gnl\|Hg17\|chr11 (73050669-73051505)
	207-1030, gnl\|loxAfr1\|scaffold_2686 (98474-97623)
	207-1030, gnl\|mm7\|chr7 (96690972-96690227)
	207-1030, gnl\|Mm7\|chr7 (96690862-96690145)
	207-1030, gnl\|oryCun1\|scaffold_191847 (3495-4364)
	207-1030, gnl\|panTro1\|chr9 (74331213-74332129)
	207-1030, gnl\|rheMac2\|chr14 (71802364-71803251)
	207-1030, gnl\|rn3\|chr1 (158161750-158160999)

	hyp (1.28553)
	fbs (0.526039)
	eye (0.511509)
	fhi (0.169578)
	nmm (0.132802)
	ebs (0.118301)
	ecc (0.115035)