Ss1.1-rhyp28c_c1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCAGCCGCTGTGAACGGCTGAGCCATGGGGTGCACGCGTGACGCCATCCTGGATGCA CTGGAGAACCTGACAGCCGACGAGCTCAAGAAGTTTAAGATGAAGCTGCTCTCAGTGCCA CTGCGTGAAGGATATGGGCGCATCCCACGGGGGACGCTGCTGCCCCTGGATGCCATCGAC CTCACTGACAAGCTCGTCAACTACTACCTGGAGGAGTACAGCGCTGAGCTCACAGCGCTT GTGCTGCGTGACATCGGCATGAAGGAGGTGGCGGAGCAGCTGCAGAAGACCCTGCACAAA GGCCCTGGAGCCAAGCCAGCTGGAATCAAAGCCCTTCCCCTGAAAGCAGACAACAAACCA GCACTGCACTTCGTGGACCAGCATCGGGCAGCCCTCATCTCAAGGGTCACAGACGTGGAC GGGCTGCTGGATGCCCTGTACGGAAAGGTGCTGACGGAAGAGCAGTACCAGGCAGTGCGG GCGGAGCACACCAACCCCACCAAAGAGGAGGCTCTTCAGCTTCACTCCGGCCTGGAACCT GACCTGCAAGGACCTGCTCCTTCAGGCCCTGAAGGACACCCAGCCCTACCTGGTGGCCGA CCTGGAGCAGAGCTGACTCGGCTTCCCCAGCAGCGGCCCCACCTACAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCAGCCGCTGTGAACGGCTGAGCCATGGGGTGCACGCGTGACGCCATCCTGGATGCA CTGGAGAACCTGACAGCCGACGAGCTCAAGAAGTTTAAGATGAAGCTGCTCTCAGTGCCA CTGCGTGAAGGATATGGGCGCATCCCACGGGGGACGCTGCTGCCCCTGGATGCCATCGAC CTCACTGACAAGCTCGTCAACTACTACCTGGAGGAGTACAGCGCTGAGCTCACAGCGCTT GTGCTGCGTGACATCGGCATGAAGGAGGTGGCGGAGCAGCTGCAGAAGACCCTGCACAAA GGCCCTGGAGCCAAGCCAGCTGGAATCAAAGCCCTTCCCCTGAAAGCAGACAACAAACCA GCACTGCACTTCGTGGACCAGCATCGGGCAGCCCTCATCTCAAGGGTCACAGACGTGGAC GGGCTGCTGGATGCCCTGTACGGAAAGGTGCTGACGGAAGAGCAGTACCAGGCAGTGCGG GCGGAGCACACCAACCCCACCAAAGAGGAGGCTCTTCAGCTTCACTCCGGCCTGGAACCT GACCTGCAAGGACCTGCTCCTTCAGGCCCTGAAGGACACCCAGCCCTACCTGGTGGCCGA CCTGGAGCAGAGCTGACTCGGCTTCCCCAGCAGCGGCCCCACCTACAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 358-456, + strand, RNAz p=0.971068 | |
| 516-646, - strand, RNAz p=0.991179 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 358-456, + strand, RNAz p=0.971068 | |
| 516-646, - strand, RNAz p=0.991179 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 23-302, gnl|bosTau2|chr25 (23049419-23049140) | |
| 23-302, gnl|Hg17|chr16 (31121517-31121238) | |
| 23-302, gnl|Mm7|chr7 (124090216-124089940) | |
| 358-646, gnl|bosTau2|chr25 (23048514-23048223) | |
| 358-646, gnl|canFam2|chr6 (20061913-20061538) | |
| 358-646, gnl|dasNov1|scaffold_113876 (2155-2530) | |
| 358-646, gnl|echTel1|scaffold_103526 (3483-3854) | |
| 358-646, gnl|hg17|chr16 (31120310-31120681) | |
| 358-646, gnl|Hg17|chr16 (31120667-31120378) | |
| 358-646, gnl|mm7|chr7 (124089203-124089541) | |
| 358-646, gnl|Mm7|chr7 (124089526-124089262) | |
| 358-646, gnl|monDom2|scaffold_19 (7956676-7957082) | |
| 358-646, gnl|oryCun1|scaffold_131209 (3956-4322) | |
| 358-646, gnl|panTro1|chr18 (31916338-31916709) | |
| 358-646, gnl|rheMac2|chr20 (29300393-29300765) | |
| 358-646, gnl|rn3|chr1 (187425904-187426241) | |
| 366-591, gnl|bosTau2|chr19 (18599397-18599170) | |
| 366-591, gnl|canFam2|chr5 (34296111-34295856) | |
| 366-591, gnl|dasNov1|scaffold_173657 (3383-3637) | |
| 366-591, gnl|echTel1|scaffold_100981 (2225-1967) | |
| 366-591, gnl|hg17|chr17 (5358832-5359087) | |
| 366-591, gnl|Hg17|chr17 (5359083-5358856) | |
| 366-591, gnl|mm7|chr11 (71173837-71174090) | |
| 366-591, gnl|Mm7|chr11 (71174086-71173859) | |
| 366-591, gnl|monDom2|scaffold_111 (2393791-2394033) | |
| 366-591, gnl|oryCun1|scaffold_131209 (4074-4304) | |
| 366-591, gnl|panTro1|chr19_random (46426641-46426386) | |
| 366-591, gnl|rheMac2|chr20 (29300495-29300746) | |
| 366-591, gnl|rn3|chr10 (57977358-57977611) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 23-302, gnl|bosTau2|chr25 (23049419-23049140) | |
| 23-302, gnl|Hg17|chr16 (31121517-31121238) | |
| 23-302, gnl|Mm7|chr7 (124090216-124089940) | |
| 358-646, gnl|bosTau2|chr25 (23048514-23048223) | |
| 358-646, gnl|canFam2|chr6 (20061913-20061538) | |
| 358-646, gnl|dasNov1|scaffold_113876 (2155-2530) | |
| 358-646, gnl|echTel1|scaffold_103526 (3483-3854) | |
| 358-646, gnl|hg17|chr16 (31120310-31120681) | |
| 358-646, gnl|Hg17|chr16 (31120667-31120378) | |
| 358-646, gnl|mm7|chr7 (124089203-124089541) | |
| 358-646, gnl|Mm7|chr7 (124089526-124089262) | |
| 358-646, gnl|monDom2|scaffold_19 (7956676-7957082) | |
| 358-646, gnl|oryCun1|scaffold_131209 (3956-4322) | |
| 358-646, gnl|panTro1|chr18 (31916338-31916709) | |
| 358-646, gnl|rheMac2|chr20 (29300393-29300765) | |
| 358-646, gnl|rn3|chr1 (187425904-187426241) | |
| 366-591, gnl|bosTau2|chr19 (18599397-18599170) | |
| 366-591, gnl|canFam2|chr5 (34296111-34295856) | |
| 366-591, gnl|dasNov1|scaffold_173657 (3383-3637) | |
| 366-591, gnl|echTel1|scaffold_100981 (2225-1967) | |
| 366-591, gnl|hg17|chr17 (5358832-5359087) | |
| 366-591, gnl|Hg17|chr17 (5359083-5358856) | |
| 366-591, gnl|mm7|chr11 (71173837-71174090) | |
| 366-591, gnl|Mm7|chr11 (71174086-71173859) | |
| 366-591, gnl|monDom2|scaffold_111 (2393791-2394033) | |
| 366-591, gnl|oryCun1|scaffold_131209 (4074-4304) | |
| 366-591, gnl|panTro1|chr19_random (46426641-46426386) | |
| 366-591, gnl|rheMac2|chr20 (29300495-29300746) | |
| 366-591, gnl|rn3|chr10 (57977358-57977611) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| ill (0.175593) | |
| duo (0.172801) | |
| nje (0.16592) | |
| hyp (0.142837) | |
| clu (0.119646) | |
| jej (0.0989218) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| duo (0.172801) | |
| nje (0.16592) | |
| hyp (0.142837) | |
| clu (0.119646) | |
| jej (0.0989218) |