Ss1.1-rhyp28c_c6.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
ATGGCAGGGACGGTGATGCTGGCGTACTACTTCGAGTACACGGACACGTTCACCGTGAAC GTGCAAGGCTTCTTCTGCCACGACAGCGCCTACCGCAAGCCCTACCCGGGCCCGGAGGAC AGCAGCGCCGTGCCCCCGGTGCTCCTCTACTCGCTGGCCGCCGGGGTCCCCGTGCTCGTG ATAATCGTTGGAGAAACTGCTGTGTTTTGCCTACAACTGGCCACAAGGGATTTTGAAAAC CAGGAGAAAACTATTTTAACTGGAGACTGTTGCTATATAAACCCACTGGTGAGGAGAACT GTCCGATTTCTTGGAATTTATACCTTTGGACTGTTTGCTACAGATATCTTTGTAAATGCC GGGCAAGTGGTTACAGGAAATCTGGCCCCGCATTTGGCTCGCCCTGTGTAAACCCAACTA CACGGCGCTTGGCTGTCAGCAGTATACGCAGTTCATCAGTGGGGAAGAAGCGTGCACGGG CAACCCGGATCTCATCATGAGAGCAAGGAAAACGTTTCCATCCAAAGAAGCCGCCCTCAG TGTCTATGCAGCCATGTATCTGACAATGTATATCACCAACACAATCAAAGCCAAAGGAAC AAGACTCGCTAAGCCTGTTCTGTGCCTGGGCTTAATGTGCTTGGCCTTTCTCACTGGACT CAACAGAGTAGCAGAGTATCGAAATCATTGGTCTGATGTGATAGCAGGCTTTCTGGTTGG AATATCTATAGCAGTATTTCTGGTCGTGTGTGTGGTAAATAATTTCAAAGGAAGACAACC AGAAAATGAGCATATACACACGGATAACCTGGCACAGATGCCTATGATCAGCATTCCTCG AGTAGAAAGTCCTTTGGAAAAGGTAACATCTGTACAGAACCACATCAC |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
ATGGCAGGGACGGTGATGCTGGCGTACTACTTCGAGTACACGGACACGTTCACCGTGAAC GTGCAAGGCTTCTTCTGCCACGACAGCGCCTACCGCAAGCCCTACCCGGGCCCGGAGGAC AGCAGCGCCGTGCCCCCGGTGCTCCTCTACTCGCTGGCCGCCGGGGTCCCCGTGCTCGTG ATAATCGTTGGAGAAACTGCTGTGTTTTGCCTACAACTGGCCACAAGGGATTTTGAAAAC CAGGAGAAAACTATTTTAACTGGAGACTGTTGCTATATAAACCCACTGGTGAGGAGAACT GTCCGATTTCTTGGAATTTATACCTTTGGACTGTTTGCTACAGATATCTTTGTAAATGCC GGGCAAGTGGTTACAGGAAATCTGGCCCCGCATTTGGCTCGCCCTGTGTAAACCCAACTA CACGGCGCTTGGCTGTCAGCAGTATACGCAGTTCATCAGTGGGGAAGAAGCGTGCACGGG CAACCCGGATCTCATCATGAGAGCAAGGAAAACGTTTCCATCCAAAGAAGCCGCCCTCAG TGTCTATGCAGCCATGTATCTGACAATGTATATCACCAACACAATCAAAGCCAAAGGAAC AAGACTCGCTAAGCCTGTTCTGTGCCTGGGCTTAATGTGCTTGGCCTTTCTCACTGGACT CAACAGAGTAGCAGAGTATCGAAATCATTGGTCTGATGTGATAGCAGGCTTTCTGGTTGG AATATCTATAGCAGTATTTCTGGTCGTGTGTGTGGTAAATAATTTCAAAGGAAGACAACC AGAAAATGAGCATATACACACGGATAACCTGGCACAGATGCCTATGATCAGCATTCCTCG AGTAGAAAGTCCTTTGGAAAAGGTAACATCTGTACAGAACCACATCAC |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 41 entry(ies) | More info |
Aligned organism(s): 41 entry(ies) | Help | Less info |
1-184, gnl|bosTau2|chr3 (34636981-34636798) | |
1-184, gnl|canFam2|chr20 (52964344-52964462) | |
1-184, gnl|danRer3|chr17 (11610673-11610791) | |
1-184, gnl|dasNov1|scaffold_6990 (48934-49052) | |
1-184, gnl|echTel1|scaffold_311913 (48197-48286) | |
1-184, gnl|fr1|chrUn (206649692-206649810) | |
1-184, gnl|galGal2|chr8 (12667199-12667081) | |
1-184, gnl|hg17|chr1 (99182008-99182126) | |
1-184, gnl|Hg17|chr1 (99182191-99182008) | |
1-184, gnl|loxAfr1|scaffold_8535 (23623-23505) | |
1-184, gnl|mm7|chr3 (117351141-117351023) | |
1-184, gnl|Mm7|chr3 (117350956-117351139) | |
1-184, gnl|monDom2|scaffold_0 (20438814-20438696) | |
1-184, gnl|oryCun1|scaffold_198495 (25393-25275) | |
1-184, gnl|panTro1|chr1 (98222230-98222348) | |
1-184, gnl|rheMac2|chr1 (102083769-102083887) | |
1-184, gnl|rn3|chr2 (213889693-213889575) | |
1-184, gnl|tetNig1|chrUn_random (51978630-51978748) | |
1-184, gnl|xenTro1|scaffold_36 (1625574-1625692) | |
313-565, gnl|bosTau2|chr3 (34586610-34586359) | |
313-565, gnl|Hg17|chr1 (99130898-99130647) | |
313-565, gnl|Mm7|chr3 (117400857-117401108) | |
566-744, gnl|bosTau2|chr3 (34546560-34546382) | |
566-744, gnl|canFam2|chr6 (53941401-53941206) | |
566-744, gnl|danRer3|chrNA (31497491-31497686) | |
566-744, gnl|dasNov1|scaffold_7319 (41352-41157) | |
566-744, gnl|echTel1|scaffold_314913 (594-399) | |
566-744, gnl|fr1|chrUn (322572363-322572549) | |
566-744, gnl|galGal2|chr8 (12698723-12698533) | |
566-744, gnl|hg17|chr1 (99099454-99099649) | |
566-744, gnl|Hg17|chr1 (99099635-99099457) | |
566-744, gnl|loxAfr1|scaffold_1744 (44401-44205) | |
566-744, gnl|mm7|chr3 (117437839-117437646) | |
566-744, gnl|Mm7|chr3 (117437656-117437834) | |
566-744, gnl|monDom2|scaffold_0 (20588326-20588131) | |
566-744, gnl|oryCun1|scaffold_198447 (39443-39633) | |
566-744, gnl|panTro1|chr1 (98135006-98135201) | |
566-744, gnl|rheMac2|chr1 (101999453-101999648) | |
566-744, gnl|rn3|chr2 (213976394-213976201) | |
566-744, gnl|tetNig1|chrUn_random (51975153-51975338) | |
566-744, gnl|xenTro1|scaffold_36 (1556153-1556342) |
Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-184, gnl|bosTau2|chr3 (34636981-34636798) | |
1-184, gnl|canFam2|chr20 (52964344-52964462) | |
1-184, gnl|danRer3|chr17 (11610673-11610791) | |
1-184, gnl|dasNov1|scaffold_6990 (48934-49052) | |
1-184, gnl|echTel1|scaffold_311913 (48197-48286) | |
1-184, gnl|fr1|chrUn (206649692-206649810) | |
1-184, gnl|galGal2|chr8 (12667199-12667081) | |
1-184, gnl|hg17|chr1 (99182008-99182126) | |
1-184, gnl|Hg17|chr1 (99182191-99182008) | |
1-184, gnl|loxAfr1|scaffold_8535 (23623-23505) | |
1-184, gnl|mm7|chr3 (117351141-117351023) | |
1-184, gnl|Mm7|chr3 (117350956-117351139) | |
1-184, gnl|monDom2|scaffold_0 (20438814-20438696) | |
1-184, gnl|oryCun1|scaffold_198495 (25393-25275) | |
1-184, gnl|panTro1|chr1 (98222230-98222348) | |
1-184, gnl|rheMac2|chr1 (102083769-102083887) | |
1-184, gnl|rn3|chr2 (213889693-213889575) | |
1-184, gnl|tetNig1|chrUn_random (51978630-51978748) | |
1-184, gnl|xenTro1|scaffold_36 (1625574-1625692) | |
313-565, gnl|bosTau2|chr3 (34586610-34586359) | |
313-565, gnl|Hg17|chr1 (99130898-99130647) | |
313-565, gnl|Mm7|chr3 (117400857-117401108) | |
566-744, gnl|bosTau2|chr3 (34546560-34546382) | |
566-744, gnl|canFam2|chr6 (53941401-53941206) | |
566-744, gnl|danRer3|chrNA (31497491-31497686) | |
566-744, gnl|dasNov1|scaffold_7319 (41352-41157) | |
566-744, gnl|echTel1|scaffold_314913 (594-399) | |
566-744, gnl|fr1|chrUn (322572363-322572549) | |
566-744, gnl|galGal2|chr8 (12698723-12698533) | |
566-744, gnl|hg17|chr1 (99099454-99099649) | |
566-744, gnl|Hg17|chr1 (99099635-99099457) | |
566-744, gnl|loxAfr1|scaffold_1744 (44401-44205) | |
566-744, gnl|mm7|chr3 (117437839-117437646) | |
566-744, gnl|Mm7|chr3 (117437656-117437834) | |
566-744, gnl|monDom2|scaffold_0 (20588326-20588131) | |
566-744, gnl|oryCun1|scaffold_198447 (39443-39633) | |
566-744, gnl|panTro1|chr1 (98135006-98135201) | |
566-744, gnl|rheMac2|chr1 (101999453-101999648) | |
566-744, gnl|rn3|chr2 (213976394-213976201) | |
566-744, gnl|tetNig1|chrUn_random (51975153-51975338) | |
566-744, gnl|xenTro1|scaffold_36 (1556153-1556342) |
Expressed library(ies): 3 entry(ies) | More info |
Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cut (0.169924) | |
hyp (0.142837) | |
spc (0.113366) |