Ss1.1-rhyp28c_f9.5
|
TGAAGGAGACCTCCACAGCCCCCCTGGCACAGCCCCCTGGCAAGGGCATGGATGATCGAC
TCTTCTACATCTACACGTCAGGGACCACGGGGCTGCCCAAGGCTGCTATCGTCGTGCACA
GCAGGTACTACCGCATCGCGGCATTCGGCCACCACTCCTACCGCATGCAGGCAACAGACG
TGATCTATGACTGCCTGCCCCTGTATCACTCGGCAGGGAACATCGTGGGCGTGGGTCAGT
GTCTCATCTACGGGCTGACGGTGGTCCTCCGCAAGAAGTTTTCAGCCAGCCGCTTCTGGG
AGGACTGTGTCAAGTACAACTGCACGGTGGGGAAACTGAGGCTTCTGATGCAGCTGGGAT
GGGACACAGATTGCCTGAGCTCCTAGAGGAACTGCCTTCTTTATGCTCTGTGCTGGGAAG
GTCTTCCCTGCTGGTGGTGGCAGGGGGTTGAGTGCTGTCACCACCCTGGACTGGTTAAGG
CCACAAGACTGGGGGCATCGCACTGGGGTAAACATGAGGCAGAGGTGGAGGGCATCCACT
GCCCTGCAGAACAGGTAAAAGTTGAGACAAGTCCCTTCCTCTCCTCTCCACAGTGAGAGG
ACCCCAGGCTGAGAGTTTCAATGCTGTGATGGGGCTGGAAATAGAGGTGCTAGAACCTCC
CTTCAGGACAGAGAAGGAGTGAGGAAGGGAGAAGAGGGAGTGTGTTCAGGGTCTGGCACA
TGGGCAGATGCTGACCCCACCTTGTGCAGGTGGGGCCTGGAGAGGTTCAGCCACTTGCCT
GGATCACACAGGTGGGCACGGTGGGGGCTCTGGGCTGGGCATCCTGAAGGAGCCTTCAGC
ATGATGACTGTGCCCTGTTCTACTTTTGAGGATTTTATGTTCTGCTTGGGGGGAGGGGTC
TTTGAGAAACTTGCTAATTTGAATTTTGAAATATAAAACAGTCCATTTTATTAACTTCAT
TATTGAGAGTTGCAGATACACATAAATGTGGACAGAAGAGTTTAGGGGGTTCCCAGGTAC
CTGTCACTTGACTCCAGAGGCCATCAAATACCCTGTCCTGTCCACCCCCCACCCCACATC
CCTCCTTCTGTGTTGTGAAGCAGCCCCAGGCAGCAGTGTGTTTCCTGCATATAGTAAAAC |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGAAGGAGACCTCCACAGCCCCCCTGGCACAGCCCCCTGGCAAGGGCATGGATGATCGAC
TCTTCTACATCTACACGTCAGGGACCACGGGGCTGCCCAAGGCTGCTATCGTCGTGCACA
GCAGGTACTACCGCATCGCGGCATTCGGCCACCACTCCTACCGCATGCAGGCAACAGACG
TGATCTATGACTGCCTGCCCCTGTATCACTCGGCAGGGAACATCGTGGGCGTGGGTCAGT
GTCTCATCTACGGGCTGACGGTGGTCCTCCGCAAGAAGTTTTCAGCCAGCCGCTTCTGGG
AGGACTGTGTCAAGTACAACTGCACGGTGGGGAAACTGAGGCTTCTGATGCAGCTGGGAT
GGGACACAGATTGCCTGAGCTCCTAGAGGAACTGCCTTCTTTATGCTCTGTGCTGGGAAG
GTCTTCCCTGCTGGTGGTGGCAGGGGGTTGAGTGCTGTCACCACCCTGGACTGGTTAAGG
CCACAAGACTGGGGGCATCGCACTGGGGTAAACATGAGGCAGAGGTGGAGGGCATCCACT
GCCCTGCAGAACAGGTAAAAGTTGAGACAAGTCCCTTCCTCTCCTCTCCACAGTGAGAGG
ACCCCAGGCTGAGAGTTTCAATGCTGTGATGGGGCTGGAAATAGAGGTGCTAGAACCTCC
CTTCAGGACAGAGAAGGAGTGAGGAAGGGAGAAGAGGGAGTGTGTTCAGGGTCTGGCACA
TGGGCAGATGCTGACCCCACCTTGTGCAGGTGGGGCCTGGAGAGGTTCAGCCACTTGCCT
GGATCACACAGGTGGGCACGGTGGGGGCTCTGGGCTGGGCATCCTGAAGGAGCCTTCAGC
ATGATGACTGTGCCCTGTTCTACTTTTGAGGATTTTATGTTCTGCTTGGGGGGAGGGGTC
TTTGAGAAACTTGCTAATTTGAATTTTGAAATATAAAACAGTCCATTTTATTAACTTCAT
TATTGAGAGTTGCAGATACACATAAATGTGGACAGAAGAGTTTAGGGGGTTCCCAGGTAC
CTGTCACTTGACTCCAGAGGCCATCAAATACCCTGTCCTGTCCACCCCCCACCCCACATC
CCTCCTTCTGTGTTGTGAAGCAGCCCCAGGCAGCAGTGTGTTTCCTGCATATAGTAAAAC |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
209-328, gnl|bosTau2|chr7 (4895996-4895877) |
|
209-328, gnl|Hg17|chr19 (17460809-17460928) |
|
209-328, gnl|Mm7|chr8 (70047921-70048040) |
| |
|
504-689, gnl|bosTau2|chr7 (4895522-4895336) |
|
504-689, gnl|canFam2|chr20 (48325064-48324571) |
|
504-689, gnl|hg17|chr19 (17461165-17461660) |
|
504-689, gnl|Hg17|chr19 (17461498-17461725) |
|
504-689, gnl|panTro1|chr20 (18450719-18451216) |
|
504-689, gnl|rheMac2|chr19 (17050135-17050565) |
| |
|
724-1116, gnl|bosTau2|chr7 (4895034-4894638) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
209-328, gnl|bosTau2|chr7 (4895996-4895877) |
|
209-328, gnl|Hg17|chr19 (17460809-17460928) |
|
209-328, gnl|Mm7|chr8 (70047921-70048040) |
| |
|
504-689, gnl|bosTau2|chr7 (4895522-4895336) |
|
504-689, gnl|canFam2|chr20 (48325064-48324571) |
|
504-689, gnl|hg17|chr19 (17461165-17461660) |
|
504-689, gnl|Hg17|chr19 (17461498-17461725) |
|
504-689, gnl|panTro1|chr20 (18450719-18451216) |
|
504-689, gnl|rheMac2|chr19 (17050135-17050565) |
| |
|
724-1116, gnl|bosTau2|chr7 (4895034-4894638) |
|
ill (0.175593) |
|
hyp (0.142837) |
|
pla (0.133672) |
|
ill (0.175593) |
|
hyp (0.142837) |
|
pla (0.133672) |
