Non-Coding RNA Search

Ss1.1-rhyp30c_e19.5

Sequence:


               
               GCCATCTGCGCCCTCTTCATGCTGCCACTCTGCCTCATGGTGTGCCAGTGGCGCTGCCTC
CGCTGCCTGCGCCATCAGCACGATGACTTTGCTGACGACATCTCCCTGCTGAAGTGAGGA
GGTCTATGGGCAGAAAAGAGAGATTCCCCTGGACCACATCCGGTGGTTCACTTTGGTCAC
AAGTAGGAGACAGAGATGGCACTTGTGGCCAGAGCACCTCAAGACCCTCACCCACCCACC
AAATGCCTCTGCCTTGACAGAAAAGAAGAGCTGGCAAGGTGGGTTACAGGGACTGCACCT
GTAGGAGACAGGAGAGGGAAGAAGCGCTCTGGTGGCGGGAATACTCTTGGTCACCTCCAA
CTTGAGTTGGGAAATTCTGCTGCTTGAAACTTCGGCCCTGAACCTTTGCCCACCATCCCT
TTAGATTCTCCAAACCCAAAGTATTCTTCTTTCCTTAGTTCCAGGAGTGGCATCACACCC
AGGTGACCCAGTGTGCATCTCTGCAGTACGTTGGCAGAGAAAGGGCCAATCTTGTTTCCC
TGCTGGCCACGGTCAGCAGGGACGGATGCACAGTTTGCTCCTTGCTTGAGACATAGGGAC
TGTATAGACAAGCCTAACATTGGTGCAAAGACTGCTTCTTGAATTAAAAAATAATTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCATCTGCGCCCTCTTCATGCTGCCACTCTGCCTCATGGTGTGCCAGTGGCGCTGCCTC
CGCTGCCTGCGCCATCAGCACGATGACTTTGCTGACGACATCTCCCTGCTGAAGTGAGGA
GGTCTATGGGCAGAAAAGAGAGATTCCCCTGGACCACATCCGGTGGTTCACTTTGGTCAC
AAGTAGGAGACAGAGATGGCACTTGTGGCCAGAGCACCTCAAGACCCTCACCCACCCACC
AAATGCCTCTGCCTTGACAGAAAAGAAGAGCTGGCAAGGTGGGTTACAGGGACTGCACCT
GTAGGAGACAGGAGAGGGAAGAAGCGCTCTGGTGGCGGGAATACTCTTGGTCACCTCCAA
CTTGAGTTGGGAAATTCTGCTGCTTGAAACTTCGGCCCTGAACCTTTGCCCACCATCCCT
TTAGATTCTCCAAACCCAAAGTATTCTTCTTTCCTTAGTTCCAGGAGTGGCATCACACCC
AGGTGACCCAGTGTGCATCTCTGCAGTACGTTGGCAGAGAAAGGGCCAATCTTGTTTCCC
TGCTGGCCACGGTCAGCAGGGACGGATGCACAGTTTGCTCCTTGCTTGAGACATAGGGAC
TGTATAGACAAGCCTAACATTGGTGCAAAGACTGCTTCTTGAATTAAAAAATAATTTAAA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               192-301, - strand, RNAz p=0.851152
               

               
               197-312, - strand, RNAz p=0.618656
               

               
               368-580, - strand, RNAz p=0.957938
               

               
               503-620, + strand, RNAz p=0.776134

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               192-301, - strand, RNAz p=0.851152
               

               
               197-312, - strand, RNAz p=0.618656
               

               
               368-580, - strand, RNAz p=0.957938
               

               
               503-620, + strand, RNAz p=0.776134

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               519-623, + strand, RNAmicro p=0.994897

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               519-623, + strand, RNAmicro p=0.994897

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_138971, -
               

               
               5' of NM_138971, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_138971, -
               

               
               5' of NM_138971, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-660, gnl|bosTau2|chr15 (13564548-13563891)
               

               
               1-660, gnl|canFam2|chr5 (19322187-19320891)
               

               
               1-660, gnl|dasNov1|scaffold_4916 (55578-56830)
               

               
               1-660, gnl|echTel1|scaffold_300516 (7780-8918)
               

               
               1-660, gnl|hg17|chr11 (116664190-116665451)
               

               
               1-660, gnl|Hg17|chr11 (116665608-116664945)
               

               
               1-660, gnl|loxAfr1|scaffold_7234 (53829-52638)
               

               
               1-660, gnl|mm7|chr9 (45819691-45818461)
               

               
               1-660, gnl|Mm7|chr9 (45818302-45818954)
               

               
               1-660, gnl|monDom2|scaffold_2 (122002372-122001034)
               

               
               1-660, gnl|oryCun1|scaffold_174906 (7508-8769)
               

               
               1-660, gnl|panTro1|chr9 (118666341-118667606)
               

               
               1-660, gnl|rheMac2|chr14 (115689297-115690549)
               

               
               1-660, gnl|rn3|chr8 (48849480-48848265)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr15 (13564548-13563891)
               

               
               1-660, gnl|canFam2|chr5 (19322187-19320891)
               

               
               1-660, gnl|dasNov1|scaffold_4916 (55578-56830)
               

               
               1-660, gnl|echTel1|scaffold_300516 (7780-8918)
               

               
               1-660, gnl|hg17|chr11 (116664190-116665451)
               

               
               1-660, gnl|Hg17|chr11 (116665608-116664945)
               

               
               1-660, gnl|loxAfr1|scaffold_7234 (53829-52638)
               

               
               1-660, gnl|mm7|chr9 (45819691-45818461)
               

               
               1-660, gnl|Mm7|chr9 (45818302-45818954)
               

               
               1-660, gnl|monDom2|scaffold_2 (122002372-122001034)
               

               
               1-660, gnl|oryCun1|scaffold_174906 (7508-8769)
               

               
               1-660, gnl|panTro1|chr9 (118666341-118667606)
               

               
               1-660, gnl|rheMac2|chr14 (115689297-115690549)
               

               
               1-660, gnl|rn3|chr8 (48849480-48848265)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fbs (0.350693)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               hyp (0.142837)

	192-301, - strand, RNAz p=0.851152
	197-312, - strand, RNAz p=0.618656
	368-580, - strand, RNAz p=0.957938
	503-620, + strand, RNAz p=0.776134

	1-660, gnl\|bosTau2\|chr15 (13564548-13563891)
	1-660, gnl\|canFam2\|chr5 (19322187-19320891)
	1-660, gnl\|dasNov1\|scaffold_4916 (55578-56830)
	1-660, gnl\|echTel1\|scaffold_300516 (7780-8918)
	1-660, gnl\|hg17\|chr11 (116664190-116665451)
	1-660, gnl\|Hg17\|chr11 (116665608-116664945)
	1-660, gnl\|loxAfr1\|scaffold_7234 (53829-52638)
	1-660, gnl\|mm7\|chr9 (45819691-45818461)
	1-660, gnl\|Mm7\|chr9 (45818302-45818954)
	1-660, gnl\|monDom2\|scaffold_2 (122002372-122001034)
	1-660, gnl\|oryCun1\|scaffold_174906 (7508-8769)
	1-660, gnl\|panTro1\|chr9 (118666341-118667606)
	1-660, gnl\|rheMac2\|chr14 (115689297-115690549)
	1-660, gnl\|rn3\|chr8 (48849480-48848265)