Ss1.1-rhyp30c_j3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTAATTTAAAATTCCAAGCTGATTTCTCCCAACTGTCTGTATACTTTTAGGCCCTTTCTC CTTGAGGAGTTTGTGTTTAGTTAATACAGATTCAGTGTTGAAAGAACAATTAGGGGAGTC TAGATCCTTACCAAATTTAATATATTCAAAAACGAAAGTTGATTTTAAAAATTATTTCCT GTTTGGGGTTTTTACTGCTCTGACTTGCCTCTGTTAATGAGAGTAATCATGAGATTCTTA TGCCCTCCCTCTTCAGCCCAGTGTAGGGCACATTATCCATCCTGCCTTCAATTTGAGAAT TCTATTACAAATGCACAGGCAAGTAAATCGCATTTCTTATTTCCTTTAAGGGATTGCGCA GCGATGTACAGCTATCAAGTACCACTTTTCTCAGCCGATCCGCTTACGAAACATTCCTTT CAATTTGACCAAGACAATACAGCAAGATGAATGGCACCTGCTTCATTTAAGAAGAATCAC TGCTGGCTTCCTGGGCATGGCTGTGGCCGTCCTGCTCTGTGGCTGCATCGTAGCCACGGT CAGCTTCTTCTGGGAGGAAAGCCTGACTCAGCACGTGGCCGGACTCCTCTTCCTCATGAC AGGAATATTTTGCACCATTTCCCTCTGCACTTACGCTGCCAGCATCTCCTATGATTTGAA CCGGCTCCCGAAGCTAATTTATAGCCTGCCTGATGATGTGGAACATGGCTAGAGCTGGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTAATTTAAAATTCCAAGCTGATTTCTCCCAACTGTCTGTATACTTTTAGGCCCTTTCTC CTTGAGGAGTTTGTGTTTAGTTAATACAGATTCAGTGTTGAAAGAACAATTAGGGGAGTC TAGATCCTTACCAAATTTAATATATTCAAAAACGAAAGTTGATTTTAAAAATTATTTCCT GTTTGGGGTTTTTACTGCTCTGACTTGCCTCTGTTAATGAGAGTAATCATGAGATTCTTA TGCCCTCCCTCTTCAGCCCAGTGTAGGGCACATTATCCATCCTGCCTTCAATTTGAGAAT TCTATTACAAATGCACAGGCAAGTAAATCGCATTTCTTATTTCCTTTAAGGGATTGCGCA GCGATGTACAGCTATCAAGTACCACTTTTCTCAGCCGATCCGCTTACGAAACATTCCTTT CAATTTGACCAAGACAATACAGCAAGATGAATGGCACCTGCTTCATTTAAGAAGAATCAC TGCTGGCTTCCTGGGCATGGCTGTGGCCGTCCTGCTCTGTGGCTGCATCGTAGCCACGGT CAGCTTCTTCTGGGAGGAAAGCCTGACTCAGCACGTGGCCGGACTCCTCTTCCTCATGAC AGGAATATTTTGCACCATTTCCCTCTGCACTTACGCTGCCAGCATCTCCTATGATTTGAA CCGGCTCCCGAAGCTAATTTATAGCCTGCCTGATGATGTGGAACATGGCTAGAGCTGGTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 465-616, + strand, RNAz p=0.667095 | |
| 503-604, + strand, RNAz p=0.762167 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 465-616, + strand, RNAz p=0.667095 | |
| 503-604, + strand, RNAz p=0.762167 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 6-464, gnl|bosTau2|chr11 (16988951-16989409) | |
| 6-464, gnl|Hg17|chr2 (39842553-39842985) | |
| 6-464, gnl|Mm7|chr17 (79282883-79283341) | |
| 465-616, gnl|bosTau2|chr11 (16992468-16992619) | |
| 465-616, gnl|canFam2|chr17 (34777772-34777887) | |
| 465-616, gnl|danRer3|chr23 (30267098-30267213) | |
| 465-616, gnl|dasNov1|scaffold_380 (40150-40038) | |
| 465-616, gnl|echTel1|scaffold_208867 (2716-2601) | |
| 465-616, gnl|fr1|chrUn (261932144-261932259) | |
| 465-616, gnl|hg17|chr2 (39845839-39845954) | |
| 465-616, gnl|Hg17|chr2 (39845840-39845991) | |
| 465-616, gnl|loxAfr1|scaffold_10474 (57689-57804) | |
| 465-616, gnl|mm7|chr17 (79286752-79286867) | |
| 465-616, gnl|Mm7|chr17 (79286753-79286904) | |
| 465-616, gnl|monDom2|scaffold_23 (43275814-43275929) | |
| 465-616, gnl|oryCun1|scaffold_185058 (8648-8763) | |
| 465-616, gnl|panTro1|chr12 (41345066-41345181) | |
| 465-616, gnl|rheMac2|chr13 (39698600-39698715) | |
| 465-616, gnl|rn3|chr6 (3934597-3934712) | |
| 465-616, gnl|tetNig1|chrUn_random (47617971-47617855) | |
| 465-616, gnl|xenTro1|scaffold_41 (1271276-1271161) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-464, gnl|bosTau2|chr11 (16988951-16989409) | |
| 6-464, gnl|Hg17|chr2 (39842553-39842985) | |
| 6-464, gnl|Mm7|chr17 (79282883-79283341) | |
| 465-616, gnl|bosTau2|chr11 (16992468-16992619) | |
| 465-616, gnl|canFam2|chr17 (34777772-34777887) | |
| 465-616, gnl|danRer3|chr23 (30267098-30267213) | |
| 465-616, gnl|dasNov1|scaffold_380 (40150-40038) | |
| 465-616, gnl|echTel1|scaffold_208867 (2716-2601) | |
| 465-616, gnl|fr1|chrUn (261932144-261932259) | |
| 465-616, gnl|hg17|chr2 (39845839-39845954) | |
| 465-616, gnl|Hg17|chr2 (39845840-39845991) | |
| 465-616, gnl|loxAfr1|scaffold_10474 (57689-57804) | |
| 465-616, gnl|mm7|chr17 (79286752-79286867) | |
| 465-616, gnl|Mm7|chr17 (79286753-79286904) | |
| 465-616, gnl|monDom2|scaffold_23 (43275814-43275929) | |
| 465-616, gnl|oryCun1|scaffold_185058 (8648-8763) | |
| 465-616, gnl|panTro1|chr12 (41345066-41345181) | |
| 465-616, gnl|rheMac2|chr13 (39698600-39698715) | |
| 465-616, gnl|rn3|chr6 (3934597-3934712) | |
| 465-616, gnl|tetNig1|chrUn_random (47617971-47617855) | |
| 465-616, gnl|xenTro1|scaffold_41 (1271276-1271161) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) | |
| hyp (0.142837) |