Non-Coding RNA Search

Ss1.1-rhyp30c_o10.5

Sequence:


               
               CCCTGCAGCAGCTAGAGGCGGCCGCAGTCACCGTCTGCAACCAGTCATGGAGTGAGCTGC
AGGCTCGAGCGCCAGGCAGGCAGGCCCACCTGCCCCACTACTGCGCCGGGGCCATGTTCG
TGCAGCAGCTGCTAAGCCGTGGCTACGGCTTCGACGAACGCGCCTTCGGAGGCGTGACCT
TCCAGAAGAAGGCCGGGGACACCGCGGTCGGCTGGGCGCTTGGCTACATGCTGAACCTGA
CCAACCTGATCCCCGCCGACCCGCCCGGGCTGCGCAAGGGCGCAGACTTCGGCTCCTGGG
TCGTCCTCCTCCTGCTCTTCGCCGCCATGCTCCTGGCCACGGTCGTCCTTCTGGGGCTCC
AGGCGCGCTCTTCTAAGGCGCCGAGCGCCATCTAGTGGCGGGCTGGGGACAGCAACCCCA
GCCCCACGTCCCCGTGGCTCGCCCCCCTCCACGTCTTTTCCCCTCATGCAGCCACGGGAG
CAAGACTCTAGCGGCAGGATGGGTGGGATGGGTGAAGGGCACTGAATCTAGCCCACTCCT
GCCCACTGCAGCCTTAGCTTCACCTCAAGGCCTTGGGTTCATCCTCTTACTGGGGGCAGA
GGTTTCAGACACGGGCTGCCCTCAGCCTTTGACTGCAGGGGTGGGTCTTTATTCTGACAG
GTGCCCTCCGAGGCCCCTCCCACTCCCAGTCTTGGGCACTGGGGGCAGGGTCAGAGCCCA
CAGGCCGGAAGCCAACCCAGTGCCTACTTGTAAAGATTTTGTAATAAAAAGGTTTTCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTGCAGCAGCTAGAGGCGGCCGCAGTCACCGTCTGCAACCAGTCATGGAGTGAGCTGC
AGGCTCGAGCGCCAGGCAGGCAGGCCCACCTGCCCCACTACTGCGCCGGGGCCATGTTCG
TGCAGCAGCTGCTAAGCCGTGGCTACGGCTTCGACGAACGCGCCTTCGGAGGCGTGACCT
TCCAGAAGAAGGCCGGGGACACCGCGGTCGGCTGGGCGCTTGGCTACATGCTGAACCTGA
CCAACCTGATCCCCGCCGACCCGCCCGGGCTGCGCAAGGGCGCAGACTTCGGCTCCTGGG
TCGTCCTCCTCCTGCTCTTCGCCGCCATGCTCCTGGCCACGGTCGTCCTTCTGGGGCTCC
AGGCGCGCTCTTCTAAGGCGCCGAGCGCCATCTAGTGGCGGGCTGGGGACAGCAACCCCA
GCCCCACGTCCCCGTGGCTCGCCCCCCTCCACGTCTTTTCCCCTCATGCAGCCACGGGAG
CAAGACTCTAGCGGCAGGATGGGTGGGATGGGTGAAGGGCACTGAATCTAGCCCACTCCT
GCCCACTGCAGCCTTAGCTTCACCTCAAGGCCTTGGGTTCATCCTCTTACTGGGGGCAGA
GGTTTCAGACACGGGCTGCCCTCAGCCTTTGACTGCAGGGGTGGGTCTTTATTCTGACAG
GTGCCCTCCGAGGCCCCTCCCACTCCCAGTCTTGGGCACTGGGGGCAGGGTCAGAGCCCA
CAGGCCGGAAGCCAACCCAGTGCCTACTTGTAAAGATTTTGTAATAAAAAGGTTTTCCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5353940|gb|AAD42303.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5353940|gb|AAD42303.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               348-491, - strand, RNAz p=0.994025

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               348-491, - strand, RNAz p=0.994025

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               190-595, gnl|bosTau2|chr11 (86362030-86361608)
               

               
               190-595, gnl|Hg17|chr9 (137219151-137218554)
               

               
               190-595, gnl|Mm7|chr2 (25408079-25408440)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               190-595, gnl|bosTau2|chr11 (86362030-86361608)
               

               
               190-595, gnl|Hg17|chr9 (137219151-137218554)
               

               
               190-595, gnl|Mm7|chr2 (25408079-25408440)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.285673)
               

               
               nep (0.183925)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               nep (0.183925)

	190-595, gnl\|bosTau2\|chr11 (86362030-86361608)
	190-595, gnl\|Hg17\|chr9 (137219151-137218554)
	190-595, gnl\|Mm7\|chr2 (25408079-25408440)