Ss1.1-rhyp30c_p22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCCTGCAGATGTGGGGCTGGGTCAGCATGGGGACCAGGCCATCCTCAGCTCAGTGGCAA TTCTGACAGCTGGGGTGGCAAGGAAATCCCATTCACCCGGCAGCGGCAGCCCGCACTGGT GTCTCCGGGGCCCCCAGGGCCCCAGCGGGGACCCTTGGTGACCCAGCAGATCTCAGTGTG GCAGACAGTGCAGCGGATCCAGTCACAGCCGTCCTTCTTCTGCACCACGATCTGGCACTG TGGGCAGTGCATGGCCTCGCCCTGCTGCAGCATGGTCCTCAGCATCTCTGTCGTCTGCCG GGCAGCCACGTCATTCTGAGCCCGCAGGGCCAGGTCGTCCTGGTACTCCTTGCAGTTCAT CTGCTCGTGGATGGCCTTGCAAAGCAGGCAGTTGACGTGGAAACACACAGGGCACGTGAA CTCATTGACATCATCCTCGAAGAAGCACCACCCCTTGCAGTCCGGGGTCTTGCAGTGGTA GCTGAAGGCGCTGCGGTTTTCCGCGATGGAGATGCCCAGGTCCAGAAACCGCTGGTAGTC CTCGGGGCTCAGGAGCGCCCGGATCTCCCTCTCCAGCAGCTTGCCCGAGCACGAGTAGGT GTTATCAATGAAGGGGCAGGCGACCTCGGCCTCCTGGCTGTTGCGGATGGTGCCCTGCAG ACACTCCCTGCAGAAGGTGTGCAGACACTCGCGCAGCACCACGGCCTCGCCGGGCGCCAG CACCGAGTAACACACGGGGCACTCGGTGGGCTCGGTGTTCAGCACCAGGCTCCGCTGATC CAGCTGCACGTGCTGCAGGTAGTTCCCCTCCTGCTGCTGCTGCTTCCGCTGCTGGTACTG GCGCAGCGCCTCCTCCTCACCGGCCAGGCGCGCTAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCCTGCAGATGTGGGGCTGGGTCAGCATGGGGACCAGGCCATCCTCAGCTCAGTGGCAA TTCTGACAGCTGGGGTGGCAAGGAAATCCCATTCACCCGGCAGCGGCAGCCCGCACTGGT GTCTCCGGGGCCCCCAGGGCCCCAGCGGGGACCCTTGGTGACCCAGCAGATCTCAGTGTG GCAGACAGTGCAGCGGATCCAGTCACAGCCGTCCTTCTTCTGCACCACGATCTGGCACTG TGGGCAGTGCATGGCCTCGCCCTGCTGCAGCATGGTCCTCAGCATCTCTGTCGTCTGCCG GGCAGCCACGTCATTCTGAGCCCGCAGGGCCAGGTCGTCCTGGTACTCCTTGCAGTTCAT CTGCTCGTGGATGGCCTTGCAAAGCAGGCAGTTGACGTGGAAACACACAGGGCACGTGAA CTCATTGACATCATCCTCGAAGAAGCACCACCCCTTGCAGTCCGGGGTCTTGCAGTGGTA GCTGAAGGCGCTGCGGTTTTCCGCGATGGAGATGCCCAGGTCCAGAAACCGCTGGTAGTC CTCGGGGCTCAGGAGCGCCCGGATCTCCCTCTCCAGCAGCTTGCCCGAGCACGAGTAGGT GTTATCAATGAAGGGGCAGGCGACCTCGGCCTCCTGGCTGTTGCGGATGGTGCCCTGCAG ACACTCCCTGCAGAAGGTGTGCAGACACTCGCGCAGCACCACGGCCTCGCCGGGCGCCAG CACCGAGTAACACACGGGGCACTCGGTGGGCTCGGTGTTCAGCACCAGGCTCCGCTGATC CAGCTGCACGTGCTGCAGGTAGTTCCCCTCCTGCTGCTGCTGCTTCCGCTGCTGGTACTG GCGCAGCGCCTCCTCCTCACCGGCCAGGCGCGCTAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 439-556, + strand, RNAz p=0.527638 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 439-556, + strand, RNAz p=0.527638 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 132-284, gnl|bosTau2|chr13 (41913415-41913263) | |
| 132-284, gnl|canFam2|chr24 (23395905-23395742) | |
| 132-284, gnl|danRer3|chr22 (8859787-8859629) | |
| 132-284, gnl|dasNov1|scaffold_60861 (3384-3549) | |
| 132-284, gnl|fr1|chrUn (174376442-174376600) | |
| 132-284, gnl|hg17|chr20 (357583-357745) | |
| 132-284, gnl|Hg17|chr20 (357739-357587) | |
| 132-284, gnl|loxAfr1|scaffold_77597 (5280-5098) | |
| 132-284, gnl|mm7|chr2 (152059323-152059164) | |
| 132-284, gnl|Mm7|chr2 (152059168-152059319) | |
| 132-284, gnl|monDom2|scaffold_38 (2485130-2485289) | |
| 132-284, gnl|panTro1|chr21 (432660-432822) | |
| 132-284, gnl|rheMac2|chr10 (33679285-33679447) | |
| 132-284, gnl|rn3|chr3 (142551922-142551763) | |
| 132-284, gnl|tetNig1|chr11 (3345632-3345790) | |
| 132-284, gnl|xenTro1|scaffold_847 (103172-103009) | |
| 375-556, gnl|bosTau2|chr13 (41912063-41911882) | |
| 375-556, gnl|Hg17|chr20 (356137-355956) | |
| 375-556, gnl|Mm7|chr2 (152059980-152060161) | |
| 667-831, gnl|bosTau2|chr13 (41910107-41909943) | |
| 667-831, gnl|Hg17|chr20 (349676-349512) | |
| 667-831, gnl|Mm7|chr2 (152064028-152064192) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 132-284, gnl|bosTau2|chr13 (41913415-41913263) | |
| 132-284, gnl|canFam2|chr24 (23395905-23395742) | |
| 132-284, gnl|danRer3|chr22 (8859787-8859629) | |
| 132-284, gnl|dasNov1|scaffold_60861 (3384-3549) | |
| 132-284, gnl|fr1|chrUn (174376442-174376600) | |
| 132-284, gnl|hg17|chr20 (357583-357745) | |
| 132-284, gnl|Hg17|chr20 (357739-357587) | |
| 132-284, gnl|loxAfr1|scaffold_77597 (5280-5098) | |
| 132-284, gnl|mm7|chr2 (152059323-152059164) | |
| 132-284, gnl|Mm7|chr2 (152059168-152059319) | |
| 132-284, gnl|monDom2|scaffold_38 (2485130-2485289) | |
| 132-284, gnl|panTro1|chr21 (432660-432822) | |
| 132-284, gnl|rheMac2|chr10 (33679285-33679447) | |
| 132-284, gnl|rn3|chr3 (142551922-142551763) | |
| 132-284, gnl|tetNig1|chr11 (3345632-3345790) | |
| 132-284, gnl|xenTro1|scaffold_847 (103172-103009) | |
| 375-556, gnl|bosTau2|chr13 (41912063-41911882) | |
| 375-556, gnl|Hg17|chr20 (356137-355956) | |
| 375-556, gnl|Mm7|chr2 (152059980-152060161) | |
| 667-831, gnl|bosTau2|chr13 (41910107-41909943) | |
| 667-831, gnl|Hg17|chr20 (349676-349512) | |
| 667-831, gnl|Mm7|chr2 (152064028-152064192) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cli (0.152812) | |
| hyp (0.142837) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.152812) | |
| hyp (0.142837) | |
| cty (0.10408) | |
| jej (0.0989218) |