Non-Coding RNA Search

Ss1.1-rhyp31c_g18.5

Sequence:


               
               CACCCACACCACCCTGGAGCACTCTGATGGTGCCTTCAGGGTAGACAATGAGGCCATCTA
TGACATCTGTCGTAGAAAACCTCGATATTGAACGCCCAACCTACACTAATCTGAACCGCC
TCATTAGCCAAATGGTGTCCTCCATCACTGCTTCCCTGAGGTTTGATGGGGCCCTGAATG
TTGATCTGACAGAATTCCAGACCAACCTGGTGCCCTACCCCCGCATCCATTTCCCTCGGG
CCACATACGCCCCCGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAG
AGATCACTAATGCTGGCTTGGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCAGG
GTAAATACATGGCCTGCTGCCTGTTGTACCGTGGTGACGTGGTTCCCAAAGACGTCAATG
CCGCCATCGCCACCATCAAGACCAAGCGCAGCATCCAGTTGGTGGACTGGTGCCCCACTG
GCTTCAAGGTTGGCATTAATTACCAGCCCCCCACTGTGGTCCCTGGTGGAGACCTGGCCA
AAGTACAGCGGGCAGTGTGCATGCTGAGCAACACCACAGCCATCGCTGAGGCCTGGGCTC
GCCTGGACCACAAGTTTGACCTGATGTATGCCAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCCACACCACCCTGGAGCACTCTGATGGTGCCTTCAGGGTAGACAATGAGGCCATCTA
TGACATCTGTCGTAGAAAACCTCGATATTGAACGCCCAACCTACACTAATCTGAACCGCC
TCATTAGCCAAATGGTGTCCTCCATCACTGCTTCCCTGAGGTTTGATGGGGCCCTGAATG
TTGATCTGACAGAATTCCAGACCAACCTGGTGCCCTACCCCCGCATCCATTTCCCTCGGG
CCACATACGCCCCCGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAG
AGATCACTAATGCTGGCTTGGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCAGG
GTAAATACATGGCCTGCTGCCTGTTGTACCGTGGTGACGTGGTTCCCAAAGACGTCAATG
CCGCCATCGCCACCATCAAGACCAAGCGCAGCATCCAGTTGGTGGACTGGTGCCCCACTG
GCTTCAAGGTTGGCATTAATTACCAGCCCCCCACTGTGGTCCCTGGTGGAGACCTGGCCA
AAGTACAGCGGGCAGTGTGCATGCTGAGCAACACCACAGCCATCGCTGAGGCCTGGGCTC
GCCTGGACCACAAGTTTGACCTGATGTATGCCAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13435888|gb|AAH04790.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13435888|gb|AAH04790.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-160, - strand, RNAz p=0.871596
               

               
               201-440, - strand, RNAz p=0.997594
               

               
               520-636, - strand, RNAz p=0.598569

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-160, - strand, RNAz p=0.871596
               

               
               201-440, - strand, RNAz p=0.997594
               

               
               520-636, - strand, RNAz p=0.598569

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-636, gnl|bosTau2|chr10 (46593220-46592592)
               

               
               1-636, gnl|Hg17|chr12 (47865846-47865212)
               

               
               1-636, gnl|Mm7|chr15 (98936080-98935445)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr10 (46593220-46592592)
               

               
               1-636, gnl|Hg17|chr12 (47865846-47865212)
               

               
               1-636, gnl|Mm7|chr15 (98936080-98935445)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               med (0.116252)

	1-160, - strand, RNAz p=0.871596
	201-440, - strand, RNAz p=0.997594
	520-636, - strand, RNAz p=0.598569

	1-636, gnl\|bosTau2\|chr10 (46593220-46592592)
	1-636, gnl\|Hg17\|chr12 (47865846-47865212)
	1-636, gnl\|Mm7\|chr15 (98936080-98935445)